miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 142280 0.66 0.623351
Target:  5'- ----gUCCCgGCGGCcAGaCCGgCCGGg -3'
miRNA:   3'- gacaaGGGGgCGCCGuUC-GGCgGGCC- -5'
29398 5' -62.7 NC_006151.1 + 141761 0.67 0.554623
Target:  5'- -cGcgCCCCgGUGGCGucGCCGguucuguCCCGGg -3'
miRNA:   3'- gaCaaGGGGgCGCCGUu-CGGC-------GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 141687 0.67 0.555579
Target:  5'- uCUGccUCCCaCgGCGGCuGGCggcggacgcggUGCCCGGg -3'
miRNA:   3'- -GACa-AGGG-GgCGCCGuUCG-----------GCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 141590 0.78 0.125034
Target:  5'- ----cCCCCCG-GGCGagAGCCGCCCGGc -3'
miRNA:   3'- gacaaGGGGGCgCCGU--UCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 139593 0.72 0.286784
Target:  5'- -cGcgCCCCCccgaGCGGCGGcCCGUCCGGg -3'
miRNA:   3'- gaCaaGGGGG----CGCCGUUcGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 138591 0.68 0.508483
Target:  5'- ----aCCCCgucguguaCGCGGCGcuGCCGCUCGGc -3'
miRNA:   3'- gacaaGGGG--------GCGCCGUu-CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 136264 0.67 0.546044
Target:  5'- cCUcUUCCaCCCGCGGCcGGCCuacgaccugcggGCCCu- -3'
miRNA:   3'- -GAcAAGG-GGGCGCCGuUCGG------------CGGGcc -5'
29398 5' -62.7 NC_006151.1 + 134794 0.67 0.536563
Target:  5'- cCUGUgaggCCGCGGCGGcCCGCgCCGGa -3'
miRNA:   3'- -GACAagggGGCGCCGUUcGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 134406 0.66 0.633108
Target:  5'- ---aUCCCCUGCccgcGCGAGCUGgugcugcccCCCGGg -3'
miRNA:   3'- gacaAGGGGGCGc---CGUUCGGC---------GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 133303 0.66 0.583482
Target:  5'- -gGUUCUCCCcggggGCGGCccgugucGAGgCGCgCCGGg -3'
miRNA:   3'- gaCAAGGGGG-----CGCCG-------UUCgGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 132827 0.7 0.409225
Target:  5'- gCUGgcCgCCCGCGGgAcggccaccacgggcGGCCGgCCCGGg -3'
miRNA:   3'- -GACaaGgGGGCGCCgU--------------UCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 131923 0.66 0.623351
Target:  5'- -aGggCCUCCGCGGUgcuGCCGUagCUGGc -3'
miRNA:   3'- gaCaaGGGGGCGCCGuu-CGGCG--GGCC- -5'
29398 5' -62.7 NC_006151.1 + 131430 0.68 0.499259
Target:  5'- gCUGcUCUCCUcgucggGCGGCGGGCggaaGUCCGGg -3'
miRNA:   3'- -GACaAGGGGG------CGCCGUUCGg---CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 128033 0.68 0.514982
Target:  5'- uCUGcgaCgCCCGCGGCAgcggcggcagcggcGGCUGCgCGGg -3'
miRNA:   3'- -GACaa-GgGGGCGCCGU--------------UCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 125583 0.67 0.527139
Target:  5'- -cGUgCCCggcgagCGCGGCAcgugcuacAGCCGCCCGc -3'
miRNA:   3'- gaCAaGGGg-----GCGCCGU--------UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 125245 0.7 0.38734
Target:  5'- -cGcUCCCCCGgccCGGCGGGgaCGCCCGa -3'
miRNA:   3'- gaCaAGGGGGC---GCCGUUCg-GCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 125205 0.75 0.189148
Target:  5'- -cGUgggCCCCGCGGCccccgcGGCCGCCCGu -3'
miRNA:   3'- gaCAag-GGGGCGCCGu-----UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 124835 0.68 0.481042
Target:  5'- aCUGggCCCCCaagacGCGGCGcguguGCaGCCUGGc -3'
miRNA:   3'- -GACaaGGGGG-----CGCCGUu----CGgCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 124032 0.68 0.508483
Target:  5'- -cGgaggCCCCCGaCGGCGAGUacggCGaCCUGGa -3'
miRNA:   3'- gaCaa--GGGGGC-GCCGUUCG----GC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 123883 0.67 0.546044
Target:  5'- gCUGgcgCUCgCCGCGGCcccGCCGUgCGGc -3'
miRNA:   3'- -GACaa-GGG-GGCGCCGuu-CGGCGgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.