miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29398 5' -62.7 NC_006151.1 + 120447 1.08 0.00082
Target:  5'- gCUGUUCCCCCGCGGCAAGCCGCCCGGc -3'
miRNA:   3'- -GACAAGGGGGCGCCGUUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 7013 0.83 0.055558
Target:  5'- aUGUccggCCCCCGCGGCGgccaucucGGCuCGCCCGGg -3'
miRNA:   3'- gACAa---GGGGGCGCCGU--------UCG-GCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 48574 0.8 0.092588
Target:  5'- -----aCCCUGCGGCcuGCCGCCCGGg -3'
miRNA:   3'- gacaagGGGGCGCCGuuCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 60543 0.79 0.105005
Target:  5'- uUG-UCCCCCGCGGCGAggcGCgCGCCCaGGa -3'
miRNA:   3'- gACaAGGGGGCGCCGUU---CG-GCGGG-CC- -5'
29398 5' -62.7 NC_006151.1 + 141590 0.78 0.125034
Target:  5'- ----cCCCCCG-GGCGagAGCCGCCCGGc -3'
miRNA:   3'- gacaaGGGGGCgCCGU--UCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 66057 0.78 0.12817
Target:  5'- cCUGUccaggaCCCCGCGGacGGCCGCCUGGg -3'
miRNA:   3'- -GACAag----GGGGCGCCguUCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 3624 0.77 0.144964
Target:  5'- gUGgccgUCCCCGCGGaGGGCCGCgCCGGa -3'
miRNA:   3'- gACaa--GGGGGCGCCgUUCGGCG-GGCC- -5'
29398 5' -62.7 NC_006151.1 + 13017 0.77 0.152229
Target:  5'- cCUG-UCCCUCGgGGCGcGGCCGaCCCGGc -3'
miRNA:   3'- -GACaAGGGGGCgCCGU-UCGGC-GGGCC- -5'
29398 5' -62.7 NC_006151.1 + 69737 0.76 0.171853
Target:  5'- aUGUggcCCCCCGCGGCcgcGaCCGCCgGGg -3'
miRNA:   3'- gACAa--GGGGGCGCCGuu-C-GGCGGgCC- -5'
29398 5' -62.7 NC_006151.1 + 111134 0.75 0.180317
Target:  5'- uCUGUgcgcgCCCCCGCGcGCGcGGCCGCCUu- -3'
miRNA:   3'- -GACAa----GGGGGCGC-CGU-UCGGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 90684 0.75 0.183365
Target:  5'- uUG-UCCCCCGCGGCGGGggcggcggacgcgcCCGCCCc- -3'
miRNA:   3'- gACaAGGGGGCGCCGUUC--------------GGCGGGcc -5'
29398 5' -62.7 NC_006151.1 + 125205 0.75 0.189148
Target:  5'- -cGUgggCCCCGCGGCccccgcGGCCGCCCGu -3'
miRNA:   3'- gaCAag-GGGGCGCCGu-----UCGGCGGGCc -5'
29398 5' -62.7 NC_006151.1 + 69076 0.75 0.203107
Target:  5'- ---gUCCCCCaGCGGCAcGGCCaGCUCGGc -3'
miRNA:   3'- gacaAGGGGG-CGCCGU-UCGG-CGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 6169 0.74 0.217442
Target:  5'- ----gCCUCgGCGGCGucgucggagaagaGGCCGCCCGGg -3'
miRNA:   3'- gacaaGGGGgCGCCGU-------------UCGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 117015 0.74 0.239177
Target:  5'- -cGcUCCCCCGCGGgccCGGGCCGCaggCGGu -3'
miRNA:   3'- gaCaAGGGGGCGCC---GUUCGGCGg--GCC- -5'
29398 5' -62.7 NC_006151.1 + 2854 0.73 0.262103
Target:  5'- gUGguagUCCCCCaCGGcCGGGCCGUCCGcGg -3'
miRNA:   3'- gACa---AGGGGGcGCC-GUUCGGCGGGC-C- -5'
29398 5' -62.7 NC_006151.1 + 2466 0.73 0.262103
Target:  5'- -cGagCCCCCaGCGGUuGGCCGCgCGGu -3'
miRNA:   3'- gaCaaGGGGG-CGCCGuUCGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 56275 0.73 0.268107
Target:  5'- aUGUUCcuggagaccugCCCCGCGGCGGaggcggacGCCGCgCGGu -3'
miRNA:   3'- gACAAG-----------GGGGCGCCGUU--------CGGCGgGCC- -5'
29398 5' -62.7 NC_006151.1 + 87179 0.73 0.276698
Target:  5'- ----gCgCCCGCGGCGccgccgcagcugcuGCCGCCCGGg -3'
miRNA:   3'- gacaaGgGGGCGCCGUu-------------CGGCGGGCC- -5'
29398 5' -62.7 NC_006151.1 + 46847 0.72 0.280447
Target:  5'- ----cCCCCCGgGGCGGGCC-UCCGGc -3'
miRNA:   3'- gacaaGGGGGCgCCGUUCGGcGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.