miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 119633 1.07 0.002861
Target:  5'- aACAGCGCCUACAGCGACUGCGACGUGc -3'
miRNA:   3'- -UGUCGCGGAUGUCGCUGACGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 97278 0.76 0.308324
Target:  5'- gGCAGCGCCU-CGGCGGCg--GGCGUGu -3'
miRNA:   3'- -UGUCGCGGAuGUCGCUGacgCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 10200 0.76 0.315504
Target:  5'- cGCGGCGCggGCGGCGGCUGCagaGGCGg- -3'
miRNA:   3'- -UGUCGCGgaUGUCGCUGACG---CUGCac -5'
29399 3' -56.9 NC_006151.1 + 96637 0.76 0.32281
Target:  5'- cGCAGCGCCUcgagcuCGGCGGCgagggcccggGCGACGUc -3'
miRNA:   3'- -UGUCGCGGAu-----GUCGCUGa---------CGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 76076 0.75 0.34548
Target:  5'- -gGGCGCCaGCAGCGACagggGCGGCGc- -3'
miRNA:   3'- ugUCGCGGaUGUCGCUGa---CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 70942 0.75 0.361217
Target:  5'- gACGGCGCCUucuCGGCGG-UGCG-CGUGg -3'
miRNA:   3'- -UGUCGCGGAu--GUCGCUgACGCuGCAC- -5'
29399 3' -56.9 NC_006151.1 + 97497 0.75 0.36927
Target:  5'- cGCAGCGCCUcGCGGCGGugGCGcuGCGUGu -3'
miRNA:   3'- -UGUCGCGGA-UGUCGCUgaCGC--UGCAC- -5'
29399 3' -56.9 NC_006151.1 + 52847 0.75 0.385742
Target:  5'- cCAGCGUCaGguGCGGCUGCuGCGUGg -3'
miRNA:   3'- uGUCGCGGaUguCGCUGACGcUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 128017 0.74 0.402692
Target:  5'- gGCGGCGgCgACGGCGuCUGCGACGc- -3'
miRNA:   3'- -UGUCGCgGaUGUCGCuGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 84019 0.74 0.402692
Target:  5'- gGguGCGCCgccccgACuGCGugUGCGugGUGc -3'
miRNA:   3'- -UguCGCGGa-----UGuCGCugACGCugCAC- -5'
29399 3' -56.9 NC_006151.1 + 128050 0.74 0.420107
Target:  5'- aGCGGCGgCaGCGGCGGCUGCG-CGg- -3'
miRNA:   3'- -UGUCGCgGaUGUCGCUGACGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 122279 0.74 0.428983
Target:  5'- -aGGCGCCUGCucggcuGCGugUGCGACc-- -3'
miRNA:   3'- ugUCGCGGAUGu-----CGCugACGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 115115 0.73 0.437969
Target:  5'- cCGGCGCCgcCGGCGAC-GCGcGCGUGc -3'
miRNA:   3'- uGUCGCGGauGUCGCUGaCGC-UGCAC- -5'
29399 3' -56.9 NC_006151.1 + 29590 0.73 0.465557
Target:  5'- cGCGGCGgCUGCGGCcGCgGCGGCGg- -3'
miRNA:   3'- -UGUCGCgGAUGUCGcUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 31758 0.73 0.465557
Target:  5'- --cGCGCCUGCGGCGGCggGCGcGCGc- -3'
miRNA:   3'- uguCGCGGAUGUCGCUGa-CGC-UGCac -5'
29399 3' -56.9 NC_006151.1 + 89719 0.73 0.465557
Target:  5'- gGCGGCGCCgGCcGCGGCcGCgGugGUGg -3'
miRNA:   3'- -UGUCGCGGaUGuCGCUGaCG-CugCAC- -5'
29399 3' -56.9 NC_006151.1 + 141271 0.73 0.465557
Target:  5'- cGCGGgGCCU-CGGCGGCUGCGGucCGaUGa -3'
miRNA:   3'- -UGUCgCGGAuGUCGCUGACGCU--GC-AC- -5'
29399 3' -56.9 NC_006151.1 + 56063 0.73 0.474953
Target:  5'- cGCuGCGCCUcgagaGCGGCGAgacggugucCUGCGACGa- -3'
miRNA:   3'- -UGuCGCGGA-----UGUCGCU---------GACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 47281 0.73 0.484442
Target:  5'- cGCAGCGUCcGCGGCuGCUGUGAUGg- -3'
miRNA:   3'- -UGUCGCGGaUGUCGcUGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 68303 0.73 0.484442
Target:  5'- gGCGcGCGCCcacgACGGCGAggGCGGCGUa -3'
miRNA:   3'- -UGU-CGCGGa---UGUCGCUgaCGCUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.