miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 2221 0.72 0.503685
Target:  5'- cACGGCGCCcccgGCGGCGGC-GCgGACGcUGg -3'
miRNA:   3'- -UGUCGCGGa---UGUCGCUGaCG-CUGC-AC- -5'
29399 3' -56.9 NC_006151.1 + 98472 0.72 0.503685
Target:  5'- -uGGCGCCUGCGccaCGACUGgGACGa- -3'
miRNA:   3'- ugUCGCGGAUGUc--GCUGACgCUGCac -5'
29399 3' -56.9 NC_006151.1 + 105758 0.72 0.503685
Target:  5'- gGCGgcGCGCCUG-GGCGACcGCGACGUc -3'
miRNA:   3'- -UGU--CGCGGAUgUCGCUGaCGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 124985 0.72 0.523252
Target:  5'- uGCAGCGCgUGCaccugGGCGACUGCGuccuccGCGa- -3'
miRNA:   3'- -UGUCGCGgAUG-----UCGCUGACGC------UGCac -5'
29399 3' -56.9 NC_006151.1 + 54429 0.72 0.523252
Target:  5'- cGCGGCGCUU-CGGCGACgagGCGcccgcCGUGg -3'
miRNA:   3'- -UGUCGCGGAuGUCGCUGa--CGCu----GCAC- -5'
29399 3' -56.9 NC_006151.1 + 3263 0.72 0.533145
Target:  5'- -gGGCGCC-GCGGCGcGCgGCGAUGUGc -3'
miRNA:   3'- ugUCGCGGaUGUCGC-UGaCGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 66771 0.72 0.533145
Target:  5'- gACGGcCGCCcucgggACGGCGGCgGCGGCGg- -3'
miRNA:   3'- -UGUC-GCGGa-----UGUCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 104294 0.71 0.553124
Target:  5'- uGCAG-GCgCUGCAGCGGCUGaCGugGc- -3'
miRNA:   3'- -UGUCgCG-GAUGUCGCUGAC-GCugCac -5'
29399 3' -56.9 NC_006151.1 + 139298 0.71 0.553124
Target:  5'- uCGGCGUCUGCGGCGcguGCUGCucGAcCGUGc -3'
miRNA:   3'- uGUCGCGGAUGUCGC---UGACG--CU-GCAC- -5'
29399 3' -56.9 NC_006151.1 + 54088 0.71 0.553124
Target:  5'- uGCGGCGgCgGCGGCGgccaugucgGCUGCGACGg- -3'
miRNA:   3'- -UGUCGCgGaUGUCGC---------UGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 96205 0.71 0.563198
Target:  5'- -gGGCGCCgcgucgccgugGCGGCGGCcGCGGCGa- -3'
miRNA:   3'- ugUCGCGGa----------UGUCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 95108 0.71 0.563198
Target:  5'- aGCAGCuCCU-CGGCGAUgGCGGCGUu -3'
miRNA:   3'- -UGUCGcGGAuGUCGCUGaCGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 4083 0.71 0.573321
Target:  5'- aGCGGCGCCacggUGCgGGCGACgaggGCGACa-- -3'
miRNA:   3'- -UGUCGCGG----AUG-UCGCUGa---CGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 86857 0.71 0.590622
Target:  5'- cGCAGCGCC--CGGCGACUacaucuucgugcccGCGGCGc- -3'
miRNA:   3'- -UGUCGCGGauGUCGCUGA--------------CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 103474 0.71 0.593685
Target:  5'- cACGGUGCUcGCGGCG-CUGUGGCGc- -3'
miRNA:   3'- -UGUCGCGGaUGUCGCuGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 36632 0.71 0.603913
Target:  5'- uCGGCGCC--CGGCGGCgGCGGCGc- -3'
miRNA:   3'- uGUCGCGGauGUCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 52444 0.71 0.603913
Target:  5'- cGCAGCGCCgccgccgugACGGCGGCcagGCGcCGg- -3'
miRNA:   3'- -UGUCGCGGa--------UGUCGCUGa--CGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 81270 0.71 0.603913
Target:  5'- aGCAGCGCCUcgGCGgggaucucgggcGCGGCgcgcGCGACGg- -3'
miRNA:   3'- -UGUCGCGGA--UGU------------CGCUGa---CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 102974 0.7 0.611086
Target:  5'- gACGGCGCgCUGCuGGCGcaGCUGCuggaggcgggcgagGACGUGa -3'
miRNA:   3'- -UGUCGCG-GAUG-UCGC--UGACG--------------CUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 85527 0.7 0.624425
Target:  5'- cACGG-GCCUGCuGCuGCUGCGGCGc- -3'
miRNA:   3'- -UGUCgCGGAUGuCGcUGACGCUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.