Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29399 | 3' | -56.9 | NC_006151.1 | + | 15641 | 0.66 | 0.827949 |
Target: 5'- gACGGgGCCaGCgugGGCGAC-GaCGACGUGu -3' miRNA: 3'- -UGUCgCGGaUG---UCGCUGaC-GCUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 72052 | 0.66 | 0.827949 |
Target: 5'- cGCAGCGUCU-CGGCGGC-GCG-CGc- -3' miRNA: 3'- -UGUCGCGGAuGUCGCUGaCGCuGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 74074 | 0.66 | 0.827949 |
Target: 5'- --cGCGUCcACGGCGACgcagGCGuuGUGg -3' miRNA: 3'- uguCGCGGaUGUCGCUGa---CGCugCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 78049 | 0.66 | 0.827949 |
Target: 5'- cGCGGCGCaucugGGCGACgcGCGGCGg- -3' miRNA: 3'- -UGUCGCGgaug-UCGCUGa-CGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 125490 | 0.66 | 0.827949 |
Target: 5'- cCAGCGCgUcuCGGCGcgcauGCUcgGCGACGUGa -3' miRNA: 3'- uGUCGCGgAu-GUCGC-----UGA--CGCUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 106386 | 0.66 | 0.827949 |
Target: 5'- cGCGGCGCCcGCugcGCGACggGCaGGCGcUGu -3' miRNA: 3'- -UGUCGCGGaUGu--CGCUGa-CG-CUGC-AC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 68233 | 0.66 | 0.825405 |
Target: 5'- cGCAGCGCCcGCgGGCGcgucagguagacgcGCgcgGCGACGg- -3' miRNA: 3'- -UGUCGCGGaUG-UCGC--------------UGa--CGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 83261 | 0.67 | 0.822846 |
Target: 5'- --cGCGCCaGCGGCGccccgagcucagguaGC-GCGACGUGu -3' miRNA: 3'- uguCGCGGaUGUCGC---------------UGaCGCUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 21417 | 0.67 | 0.821989 |
Target: 5'- uGCGGCGUCUcgggccucgggggucGCGGCGuggggugGCccccgGCGGCGUGg -3' miRNA: 3'- -UGUCGCGGA---------------UGUCGC-------UGa----CGCUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 106951 | 0.67 | 0.819408 |
Target: 5'- gGCgAGCGCCUGCuGGCG-CU-CGACGa- -3' miRNA: 3'- -UG-UCGCGGAUG-UCGCuGAcGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 3097 | 0.67 | 0.819408 |
Target: 5'- aGCAGCGCCgagaGGCcGCcGCGGCGc- -3' miRNA: 3'- -UGUCGCGGaug-UCGcUGaCGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 58746 | 0.67 | 0.819408 |
Target: 5'- cGCAGCGCC-GCGGCcACcGCGGCc-- -3' miRNA: 3'- -UGUCGCGGaUGUCGcUGaCGCUGcac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 69976 | 0.67 | 0.819408 |
Target: 5'- cGCGG-GCgCUGCAGCGGCgGCaGCGUc -3' miRNA: 3'- -UGUCgCG-GAUGUCGCUGaCGcUGCAc -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 29067 | 0.67 | 0.819408 |
Target: 5'- gGCGGCGCCgcggGCcccgAGaCGGCcGCGGCGa- -3' miRNA: 3'- -UGUCGCGGa---UG----UC-GCUGaCGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 103675 | 0.67 | 0.819408 |
Target: 5'- gGCGGCGCgcGCGGCGgggguGCUGCGcgccgcCGUGg -3' miRNA: 3'- -UGUCGCGgaUGUCGC-----UGACGCu-----GCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 67732 | 0.67 | 0.817679 |
Target: 5'- cGCGGCGCacaggcacggcGCGGCGGCcccgucggggUGCGGCGUc -3' miRNA: 3'- -UGUCGCGga---------UGUCGCUG----------ACGCUGCAc -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 104363 | 0.67 | 0.815943 |
Target: 5'- uCGGCGCCgACAcggagccgcucucGCGGCUggcccgcaucgccgGCGGCGUGc -3' miRNA: 3'- uGUCGCGGaUGU-------------CGCUGA--------------CGCUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 85070 | 0.67 | 0.810696 |
Target: 5'- uGCAG-GCCUGCgGGCGcCUGU-ACGUGg -3' miRNA: 3'- -UGUCgCGGAUG-UCGCuGACGcUGCAC- -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 57502 | 0.67 | 0.810696 |
Target: 5'- cGCAcGCGCUcgGCcGCGGCgGCGGCGg- -3' miRNA: 3'- -UGU-CGCGGa-UGuCGCUGaCGCUGCac -5' |
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29399 | 3' | -56.9 | NC_006151.1 | + | 30266 | 0.67 | 0.810696 |
Target: 5'- -gGGCGCCacagACAGCGGC-GCGGgGg- -3' miRNA: 3'- ugUCGCGGa---UGUCGCUGaCGCUgCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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