miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 76256 0.66 0.860246
Target:  5'- -gAGgGCCUcgACGGCGAUcgagaagGCGGCGUu -3'
miRNA:   3'- ugUCgCGGA--UGUCGCUGa------CGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 71756 0.66 0.853254
Target:  5'- -aAGCGCCgcgcgugguccugcgGCAGCGGCgGCGGgGg- -3'
miRNA:   3'- ugUCGCGGa--------------UGUCGCUGaCGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 123895 0.66 0.852467
Target:  5'- cGCGGCcccGCCgUGCGGCG-CgGCGGcCGUGa -3'
miRNA:   3'- -UGUCG---CGG-AUGUCGCuGaCGCU-GCAC- -5'
29399 3' -56.9 NC_006151.1 + 121403 0.66 0.852467
Target:  5'- -uGGgGCCUGCGGCGcggGCgGgGACGUc -3'
miRNA:   3'- ugUCgCGGAUGUCGC---UGaCgCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 82630 0.66 0.851677
Target:  5'- cGCGGUGggcgcgggaccccCCUGCGGCGAgggcggcccaccCUGCGGCGc- -3'
miRNA:   3'- -UGUCGC-------------GGAUGUCGCU------------GACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 76889 0.66 0.850886
Target:  5'- cCAGCGCCgccugcugcgcCGGCGAgaGCGGCa-- -3'
miRNA:   3'- uGUCGCGGau---------GUCGCUgaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 21978 0.66 0.850093
Target:  5'- uGCGGCGCCgGCAGCGcccaaagauCUGCcuggggucgcagucGGCGUa -3'
miRNA:   3'- -UGUCGCGGaUGUCGCu--------GACG--------------CUGCAc -5'
29399 3' -56.9 NC_006151.1 + 67732 0.67 0.817679
Target:  5'- cGCGGCGCacaggcacggcGCGGCGGCcccgucggggUGCGGCGUc -3'
miRNA:   3'- -UGUCGCGga---------UGUCGCUG----------ACGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 104363 0.67 0.815943
Target:  5'- uCGGCGCCgACAcggagccgcucucGCGGCUggcccgcaucgccgGCGGCGUGc -3'
miRNA:   3'- uGUCGCGGaUGU-------------CGCUGA--------------CGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 122937 0.67 0.810696
Target:  5'- cGCGGaCGCCgACGGCGGCgccGCGGgGg- -3'
miRNA:   3'- -UGUC-GCGGaUGUCGCUGa--CGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 85070 0.67 0.810696
Target:  5'- uGCAG-GCCUGCgGGCGcCUGU-ACGUGg -3'
miRNA:   3'- -UGUCgCGGAUG-UCGCuGACGcUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 57502 0.67 0.810696
Target:  5'- cGCAcGCGCUcgGCcGCGGCgGCGGCGg- -3'
miRNA:   3'- -UGU-CGCGGa-UGuCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 106951 0.67 0.819408
Target:  5'- gGCgAGCGCCUGCuGGCG-CU-CGACGa- -3'
miRNA:   3'- -UG-UCGCGGAUG-UCGCuGAcGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 3097 0.67 0.819408
Target:  5'- aGCAGCGCCgagaGGCcGCcGCGGCGc- -3'
miRNA:   3'- -UGUCGCGGaug-UCGcUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 58746 0.67 0.819408
Target:  5'- cGCAGCGCC-GCGGCcACcGCGGCc-- -3'
miRNA:   3'- -UGUCGCGGaUGUCGcUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 69976 0.67 0.819408
Target:  5'- cGCGG-GCgCUGCAGCGGCgGCaGCGUc -3'
miRNA:   3'- -UGUCgCG-GAUGUCGCUGaCGcUGCAc -5'
29399 3' -56.9 NC_006151.1 + 29067 0.67 0.819408
Target:  5'- gGCGGCGCCgcggGCcccgAGaCGGCcGCGGCGa- -3'
miRNA:   3'- -UGUCGCGGa---UG----UC-GCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 103675 0.67 0.819408
Target:  5'- gGCGGCGCgcGCGGCGgggguGCUGCGcgccgcCGUGg -3'
miRNA:   3'- -UGUCGCGgaUGUCGC-----UGACGCu-----GCAC- -5'
29399 3' -56.9 NC_006151.1 + 21417 0.67 0.821989
Target:  5'- uGCGGCGUCUcgggccucgggggucGCGGCGuggggugGCccccgGCGGCGUGg -3'
miRNA:   3'- -UGUCGCGGA---------------UGUCGC-------UGa----CGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 30266 0.67 0.810696
Target:  5'- -gGGCGCCacagACAGCGGC-GCGGgGg- -3'
miRNA:   3'- ugUCGCGGa---UGUCGCUGaCGCUgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.