miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 29590 0.73 0.465557
Target:  5'- cGCGGCGgCUGCGGCcGCgGCGGCGg- -3'
miRNA:   3'- -UGUCGCgGAUGUCGcUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 30266 0.67 0.810696
Target:  5'- -gGGCGCCacagACAGCGGC-GCGGgGg- -3'
miRNA:   3'- ugUCGCGGa---UGUCGCUGaCGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 31758 0.73 0.465557
Target:  5'- --cGCGCCUGCGGCGGCggGCGcGCGc- -3'
miRNA:   3'- uguCGCGGAUGUCGCUGa-CGC-UGCac -5'
29399 3' -56.9 NC_006151.1 + 36632 0.71 0.603913
Target:  5'- uCGGCGCC--CGGCGGCgGCGGCGc- -3'
miRNA:   3'- uGUCGCGGauGUCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 36952 0.66 0.844486
Target:  5'- aGCAGCuCCagcaGCAGCGGCaGCGACu-- -3'
miRNA:   3'- -UGUCGcGGa---UGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 38379 0.69 0.665455
Target:  5'- cCAGCGCCgGCGcCGGCgGCGGCGg- -3'
miRNA:   3'- uGUCGCGGaUGUcGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 40525 0.68 0.745632
Target:  5'- -aGGUGgCUGCGGCGGCgGCGGagGUGg -3'
miRNA:   3'- ugUCGCgGAUGUCGCUGaCGCUg-CAC- -5'
29399 3' -56.9 NC_006151.1 + 40564 0.68 0.745632
Target:  5'- -aAGCGgCgGCGGCGGCcGCGGCGg- -3'
miRNA:   3'- ugUCGCgGaUGUCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 47281 0.73 0.484442
Target:  5'- cGCAGCGUCcGCGGCuGCUGUGAUGg- -3'
miRNA:   3'- -UGUCGCGGaUGUCGcUGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 47692 0.68 0.774301
Target:  5'- uGCAGCGCCaUuuGGCcGgUGCGGCGUc -3'
miRNA:   3'- -UGUCGCGG-AugUCGcUgACGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 52444 0.71 0.603913
Target:  5'- cGCAGCGCCgccgccgugACGGCGGCcagGCGcCGg- -3'
miRNA:   3'- -UGUCGCGGa--------UGUCGCUGa--CGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 52755 0.7 0.624425
Target:  5'- cGCGcGCGCCUcGCAGCGcagcGCcGCGGCGUc -3'
miRNA:   3'- -UGU-CGCGGA-UGUCGC----UGaCGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 52847 0.75 0.385742
Target:  5'- cCAGCGUCaGguGCGGCUGCuGCGUGg -3'
miRNA:   3'- uGUCGCGGaUguCGCUGACGcUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 53684 0.66 0.827949
Target:  5'- gUAGCGCCcgaGCuGCGcCUGC-ACGUGg -3'
miRNA:   3'- uGUCGCGGa--UGuCGCuGACGcUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 53975 0.68 0.755301
Target:  5'- gGCGGCGCCUccGCgGGCGuC-GCGGCGa- -3'
miRNA:   3'- -UGUCGCGGA--UG-UCGCuGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 54088 0.71 0.553124
Target:  5'- uGCGGCGgCgGCGGCGgccaugucgGCUGCGACGg- -3'
miRNA:   3'- -UGUCGCgGaUGUCGC---------UGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 54429 0.72 0.523252
Target:  5'- cGCGGCGCUU-CGGCGACgagGCGcccgcCGUGg -3'
miRNA:   3'- -UGUCGCGGAuGUCGCUGa--CGCu----GCAC- -5'
29399 3' -56.9 NC_006151.1 + 54854 0.66 0.836311
Target:  5'- -gAGUGCCUggugcucugGCAGCcGCUGUGGCGc- -3'
miRNA:   3'- ugUCGCGGA---------UGUCGcUGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 54914 0.69 0.665455
Target:  5'- cGCAGCGCgUgcACGGCGAggUGCuGGCGUGc -3'
miRNA:   3'- -UGUCGCGgA--UGUCGCUg-ACG-CUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 55397 0.69 0.705043
Target:  5'- uGCGGCGCCUGC-GCGAgcaggccCUGCG-CGc- -3'
miRNA:   3'- -UGUCGCGGAUGuCGCU-------GACGCuGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.