miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 85070 0.67 0.810696
Target:  5'- uGCAG-GCCUGCgGGCGcCUGU-ACGUGg -3'
miRNA:   3'- -UGUCgCGGAUG-UCGCuGACGcUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 122937 0.67 0.810696
Target:  5'- cGCGGaCGCCgACGGCGGCgccGCGGgGg- -3'
miRNA:   3'- -UGUC-GCGGaUGUCGCUGa--CGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 67997 0.67 0.80182
Target:  5'- cCGGCGCC-GCGGCcacgGGCUcgGCGGCGUc -3'
miRNA:   3'- uGUCGCGGaUGUCG----CUGA--CGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 64223 0.67 0.80182
Target:  5'- -gGGCGCCUcggcguacaggGCcGCGACgGCGGCGc- -3'
miRNA:   3'- ugUCGCGGA-----------UGuCGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 130423 0.67 0.794608
Target:  5'- -gGGCGCgccgaccgucgaggaCUGCAGCGGCgccagaaacaugGCGugGUGc -3'
miRNA:   3'- ugUCGCG---------------GAUGUCGCUGa-----------CGCugCAC- -5'
29399 3' -56.9 NC_006151.1 + 103794 0.67 0.7937
Target:  5'- gGCGGCGCUgcaggccgcgcuguCGGCGGCcgugGCGGCGg- -3'
miRNA:   3'- -UGUCGCGGau------------GUCGCUGa---CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 103623 0.67 0.79279
Target:  5'- cGCA-CGCCgacGCGGUGGCgGCGGCGcUGg -3'
miRNA:   3'- -UGUcGCGGa--UGUCGCUGaCGCUGC-AC- -5'
29399 3' -56.9 NC_006151.1 + 17948 0.67 0.79279
Target:  5'- gGCGGCGUCUcCGGCGcccgcCUGcCGGCGUc -3'
miRNA:   3'- -UGUCGCGGAuGUCGCu----GAC-GCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 141681 0.67 0.79279
Target:  5'- gGCAuGUcuGCCUcccACGGCGGCUgGCGGCGg- -3'
miRNA:   3'- -UGU-CG--CGGA---UGUCGCUGA-CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 15099 0.67 0.79279
Target:  5'- cGCGGCGCCU-CGG-GGC--CGACGUGa -3'
miRNA:   3'- -UGUCGCGGAuGUCgCUGacGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 22335 0.67 0.783614
Target:  5'- cCAGCGCCgccaAUAGCG-CUGCGAg--- -3'
miRNA:   3'- uGUCGCGGa---UGUCGCuGACGCUgcac -5'
29399 3' -56.9 NC_006151.1 + 90844 0.67 0.783614
Target:  5'- -gGGCGCCUGCcGCGGCgucGUGAaaaaguugaaCGUGa -3'
miRNA:   3'- ugUCGCGGAUGuCGCUGa--CGCU----------GCAC- -5'
29399 3' -56.9 NC_006151.1 + 119038 0.67 0.783614
Target:  5'- -gGGCGCCaaggACGGCGGCgccGCGGCc-- -3'
miRNA:   3'- ugUCGCGGa---UGUCGCUGa--CGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 139677 0.67 0.783614
Target:  5'- gACAG-GCCcugcgGCAGCGGCgGCGGCa-- -3'
miRNA:   3'- -UGUCgCGGa----UGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 75280 0.67 0.783614
Target:  5'- cGCAGCGCCgcCAGCGug-GCGuccACGUc -3'
miRNA:   3'- -UGUCGCGGauGUCGCugaCGC---UGCAc -5'
29399 3' -56.9 NC_006151.1 + 71306 0.68 0.774301
Target:  5'- aGCAccGCGUCUucaccggcaagcGCGGCGGCUGCGcCGa- -3'
miRNA:   3'- -UGU--CGCGGA------------UGUCGCUGACGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 59665 0.68 0.774301
Target:  5'- cGCAGCGCCU-CGGgGACgcgcGCGcACGc- -3'
miRNA:   3'- -UGUCGCGGAuGUCgCUGa---CGC-UGCac -5'
29399 3' -56.9 NC_006151.1 + 47692 0.68 0.774301
Target:  5'- uGCAGCGCCaUuuGGCcGgUGCGGCGUc -3'
miRNA:   3'- -UGUCGCGG-AugUCGcUgACGCUGCAc -5'
29399 3' -56.9 NC_006151.1 + 21000 0.68 0.76486
Target:  5'- gACGGCGCUgcCGGCGACgUGC-ACGcUGa -3'
miRNA:   3'- -UGUCGCGGauGUCGCUG-ACGcUGC-AC- -5'
29399 3' -56.9 NC_006151.1 + 76802 0.68 0.76486
Target:  5'- uACAGCGCCc-CGGCGAggGCGggcGCGUa -3'
miRNA:   3'- -UGUCGCGGauGUCGCUgaCGC---UGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.