miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 3' -56.9 NC_006151.1 + 141681 0.67 0.79279
Target:  5'- gGCAuGUcuGCCUcccACGGCGGCUgGCGGCGg- -3'
miRNA:   3'- -UGU-CG--CGGA---UGUCGCUGA-CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 141271 0.73 0.465557
Target:  5'- cGCGGgGCCU-CGGCGGCUGCGGucCGaUGa -3'
miRNA:   3'- -UGUCgCGGAuGUCGCUGACGCU--GC-AC- -5'
29399 3' -56.9 NC_006151.1 + 139724 0.66 0.844486
Target:  5'- aGCAGCaGCac-CAGCGGCgGCGACa-- -3'
miRNA:   3'- -UGUCG-CGgauGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 139677 0.67 0.783614
Target:  5'- gACAG-GCCcugcgGCAGCGGCgGCGGCa-- -3'
miRNA:   3'- -UGUCgCGGa----UGUCGCUGaCGCUGcac -5'
29399 3' -56.9 NC_006151.1 + 139298 0.71 0.553124
Target:  5'- uCGGCGUCUGCGGCGcguGCUGCucGAcCGUGc -3'
miRNA:   3'- uGUCGCGGAUGUCGC---UGACG--CU-GCAC- -5'
29399 3' -56.9 NC_006151.1 + 137671 0.66 0.867819
Target:  5'- -gAGCGCCcGCcguGCGGCUGCcGCGc- -3'
miRNA:   3'- ugUCGCGGaUGu--CGCUGACGcUGCac -5'
29399 3' -56.9 NC_006151.1 + 130639 0.7 0.624425
Target:  5'- -gAGCGCCgccgaGGcCGcCUGCGGCGUGa -3'
miRNA:   3'- ugUCGCGGaug--UC-GCuGACGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 130423 0.67 0.794608
Target:  5'- -gGGCGCgccgaccgucgaggaCUGCAGCGGCgccagaaacaugGCGugGUGc -3'
miRNA:   3'- ugUCGCG---------------GAUGUCGCUGa-----------CGCugCAC- -5'
29399 3' -56.9 NC_006151.1 + 128793 0.66 0.867819
Target:  5'- uCGGuCGCCU-CGGCGAgCgcgGCGcGCGUGg -3'
miRNA:   3'- uGUC-GCGGAuGUCGCU-Ga--CGC-UGCAC- -5'
29399 3' -56.9 NC_006151.1 + 128050 0.74 0.420107
Target:  5'- aGCGGCGgCaGCGGCGGCUGCG-CGg- -3'
miRNA:   3'- -UGUCGCgGaUGUCGCUGACGCuGCac -5'
29399 3' -56.9 NC_006151.1 + 128017 0.74 0.402692
Target:  5'- gGCGGCGgCgACGGCGuCUGCGACGc- -3'
miRNA:   3'- -UGUCGCgGaUGUCGCuGACGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 127238 0.66 0.867819
Target:  5'- cACAcGCGCCaGCucuuGCGGC-GCGACGc- -3'
miRNA:   3'- -UGU-CGCGGaUGu---CGCUGaCGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 125490 0.66 0.827949
Target:  5'- cCAGCGCgUcuCGGCGcgcauGCUcgGCGACGUGa -3'
miRNA:   3'- uGUCGCGgAu-GUCGC-----UGA--CGCUGCAC- -5'
29399 3' -56.9 NC_006151.1 + 124985 0.72 0.523252
Target:  5'- uGCAGCGCgUGCaccugGGCGACUGCGuccuccGCGa- -3'
miRNA:   3'- -UGUCGCGgAUG-----UCGCUGACGC------UGCac -5'
29399 3' -56.9 NC_006151.1 + 123895 0.66 0.852467
Target:  5'- cGCGGCcccGCCgUGCGGCG-CgGCGGcCGUGa -3'
miRNA:   3'- -UGUCG---CGG-AUGUCGCuGaCGCU-GCAC- -5'
29399 3' -56.9 NC_006151.1 + 123083 0.68 0.725012
Target:  5'- gGCGGCGCCUguACGcggaccgccucucGCGGCgcucgGCGGCGa- -3'
miRNA:   3'- -UGUCGCGGA--UGU-------------CGCUGa----CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 122967 0.69 0.695971
Target:  5'- cGCGGaCGCCggcgACGGgGGCgucgGCGACGa- -3'
miRNA:   3'- -UGUC-GCGGa---UGUCgCUGa---CGCUGCac -5'
29399 3' -56.9 NC_006151.1 + 122937 0.67 0.810696
Target:  5'- cGCGGaCGCCgACGGCGGCgccGCGGgGg- -3'
miRNA:   3'- -UGUC-GCGGaUGUCGCUGa--CGCUgCac -5'
29399 3' -56.9 NC_006151.1 + 122452 0.7 0.644961
Target:  5'- gGCGGCGUCcACGGCGGCgGCGgGCGc- -3'
miRNA:   3'- -UGUCGCGGaUGUCGCUGaCGC-UGCac -5'
29399 3' -56.9 NC_006151.1 + 122279 0.74 0.428983
Target:  5'- -aGGCGCCUGCucggcuGCGugUGCGACc-- -3'
miRNA:   3'- ugUCGCGGAUGu-----CGCugACGCUGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.