miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 20543 0.68 0.614021
Target:  5'- uCCUCG-GCGGGGUCCaCGAcGCGCa- -3'
miRNA:   3'- cGGAGCaUGCCCCGGGaGUU-CGCGgg -5'
29399 5' -60.5 NC_006151.1 + 21531 0.68 0.584451
Target:  5'- gGCUUCGgcCGGGGCCggggCcGGgGCCUg -3'
miRNA:   3'- -CGGAGCauGCCCCGGga--GuUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 21592 0.67 0.667405
Target:  5'- gGUCgauggCGUACGGcguggcggcggcguaGGCCCgcggGAGCGUCCg -3'
miRNA:   3'- -CGGa----GCAUGCC---------------CCGGGag--UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 21971 0.67 0.643704
Target:  5'- gGCgUgGUGCGGcGCCggC-AGCGCCCa -3'
miRNA:   3'- -CGgAgCAUGCCcCGGgaGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 23241 0.69 0.564888
Target:  5'- uCCUCGcccuCGGGGgCCUCGGGgGCa- -3'
miRNA:   3'- cGGAGCau--GCCCCgGGAGUUCgCGgg -5'
29399 5' -60.5 NC_006151.1 + 23349 0.66 0.721916
Target:  5'- uUCUCG-GCGGcGGUcacguucuCC-CAGGCGCCCu -3'
miRNA:   3'- cGGAGCaUGCC-CCG--------GGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 24879 0.67 0.652603
Target:  5'- cGCCUCGcccggccgGCGGgccacgaagacgcGGCCCUCcga-GCCCg -3'
miRNA:   3'- -CGGAGCa-------UGCC-------------CCGGGAGuucgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 27175 0.67 0.633809
Target:  5'- cGCCgCGUGuCGGGGCgC-CAGGgGgCCg -3'
miRNA:   3'- -CGGaGCAU-GCCCCGgGaGUUCgCgGG- -5'
29399 5' -60.5 NC_006151.1 + 27262 0.76 0.235165
Target:  5'- gGCC-CGUAcuCGGGGUgCUCGacgacguAGCGCCCg -3'
miRNA:   3'- -CGGaGCAU--GCCCCGgGAGU-------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 28101 0.68 0.57465
Target:  5'- uCCUCGaGCGGGGCgcggcuCCUCGucggcucggGGCGCgCu -3'
miRNA:   3'- cGGAGCaUGCCCCG------GGAGU---------UCGCGgG- -5'
29399 5' -60.5 NC_006151.1 + 28264 0.67 0.67331
Target:  5'- gGCCUCacACGuGGGCCC-CGGGgacgcggGCCCg -3'
miRNA:   3'- -CGGAGcaUGC-CCCGGGaGUUCg------CGGG- -5'
29399 5' -60.5 NC_006151.1 + 30730 0.68 0.614021
Target:  5'- cCCUCucACGcGGGCCCg-GAGUGCCg -3'
miRNA:   3'- cGGAGcaUGC-CCCGGGagUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 31716 0.71 0.443757
Target:  5'- cGCCgggCGgaACGGGGCgUggagAGGCGCCCg -3'
miRNA:   3'- -CGGa--GCa-UGCCCCGgGag--UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 33891 0.68 0.604143
Target:  5'- cCCcCGgggGCGGGGgCCUC--GCGCCUc -3'
miRNA:   3'- cGGaGCa--UGCCCCgGGAGuuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 35309 0.7 0.47962
Target:  5'- gGCCgUCGa--GGGGCCaagauGGCGCCCu -3'
miRNA:   3'- -CGG-AGCaugCCCCGGgagu-UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 36385 0.68 0.604143
Target:  5'- gGCCggGgccccCGGcGGCCC-CGGGCGCUCg -3'
miRNA:   3'- -CGGagCau---GCC-CCGGGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 36607 0.67 0.683126
Target:  5'- aGCCUCccccgccGCcGGGCCgguCUC-GGCGCCCg -3'
miRNA:   3'- -CGGAGca-----UGcCCCGG---GAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 36863 0.68 0.581507
Target:  5'- gGCCUCGccggggacgGCGGGGCgCCcccgCAgagacagccccgccGGCGCCg -3'
miRNA:   3'- -CGGAGCa--------UGCCCCG-GGa---GU--------------UCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 37544 0.66 0.70941
Target:  5'- cCCUCGUgcgccucaucuacaGCGGGGCCgCcggCGAG-GCCa -3'
miRNA:   3'- cGGAGCA--------------UGCCCCGG-Ga--GUUCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 37884 0.68 0.57465
Target:  5'- cGCCggggaggcgacCGU-CGaGGCCCUCu-GCGCCCg -3'
miRNA:   3'- -CGGa----------GCAuGCcCCGGGAGuuCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.