miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 6491 0.69 0.535886
Target:  5'- aGCCUCGguggguCGGGcGUCCgUCGAGgGCUg -3'
miRNA:   3'- -CGGAGCau----GCCC-CGGG-AGUUCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 7281 0.66 0.712306
Target:  5'- cCCUCGgccaAUGGGGCCUcacggugCAAGCuUCCg -3'
miRNA:   3'- cGGAGCa---UGCCCCGGGa------GUUCGcGGG- -5'
29399 5' -60.5 NC_006151.1 + 7652 0.69 0.5455
Target:  5'- cGCCUCGcgcuCGGcGcGCgCUCcgaGGGCGCCCc -3'
miRNA:   3'- -CGGAGCau--GCC-C-CGgGAG---UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 8314 0.69 0.563914
Target:  5'- cGCCcCGagccccCGGGGCgcgcgggCCUCGAucGCGCCCg -3'
miRNA:   3'- -CGGaGCau----GCCCCG-------GGAGUU--CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 9117 0.66 0.702632
Target:  5'- cGCCUCGcacuCGcccgacacucGGCCCgcggCAcGCGCCCa -3'
miRNA:   3'- -CGGAGCau--GCc---------CCGGGa---GUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 13181 0.72 0.376849
Target:  5'- cGCCgcggcCGUcuCGGGGCCCgc-GGCGCCg -3'
miRNA:   3'- -CGGa----GCAu-GCCCCGGGaguUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 13426 0.7 0.507422
Target:  5'- gGCCcgCGUcccCGGGGCCCgCAuuggccggucccGGaCGCCCg -3'
miRNA:   3'- -CGGa-GCAu--GCCCCGGGaGU------------UC-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 13985 0.67 0.683126
Target:  5'- gGCCcgCGUcccCGGGGCCCacgugUGAG-GCCCc -3'
miRNA:   3'- -CGGa-GCAu--GCCCCGGGa----GUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 15067 0.73 0.31708
Target:  5'- cGCCUUcUGCGcGGCCCcCuGGCGCCCc -3'
miRNA:   3'- -CGGAGcAUGCcCCGGGaGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 17100 0.66 0.712306
Target:  5'- cGCC-CGU-CGGGGCgC-CGGGgGCuCCg -3'
miRNA:   3'- -CGGaGCAuGCCCCGgGaGUUCgCG-GG- -5'
29399 5' -60.5 NC_006151.1 + 17933 0.66 0.692903
Target:  5'- cGCCcaUCaGgcaGCGGcGGCgUCUCcGGCGCCCg -3'
miRNA:   3'- -CGG--AG-Ca--UGCC-CCG-GGAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 18054 0.66 0.712306
Target:  5'- cGCagCGgggaGCGGGGuCCCUUggGgGCCa -3'
miRNA:   3'- -CGgaGCa---UGCCCC-GGGAGuuCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 18307 0.66 0.702632
Target:  5'- aGCCg-GaGCGGGGCgCCUCcucgGGGCGCa- -3'
miRNA:   3'- -CGGagCaUGCCCCG-GGAG----UUCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 18737 0.73 0.331328
Target:  5'- cGCgUCGUcgccgccgcCGGGGCCC-CAcggGGUGCCCg -3'
miRNA:   3'- -CGgAGCAu--------GCCCCGGGaGU---UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 19251 0.69 0.516842
Target:  5'- aGCCgagcgCGUggaaGCGGGGCUCguggCGcgcGGgGCCCa -3'
miRNA:   3'- -CGGa----GCA----UGCCCCGGGa---GU---UCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 19494 0.66 0.712306
Target:  5'- uGCCcCGcucCGGGGCCUcggggacgCAGGCgcgGCCCa -3'
miRNA:   3'- -CGGaGCau-GCCCCGGGa-------GUUCG---CGGG- -5'
29399 5' -60.5 NC_006151.1 + 19829 0.72 0.368976
Target:  5'- aCCUCGgugACGGGGCCCg-GGGuCGUCUc -3'
miRNA:   3'- cGGAGCa--UGCCCCGGGagUUC-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 20116 0.71 0.4264
Target:  5'- cGCCcCGgcgACGGGGCUggggggCGGGCGCCg -3'
miRNA:   3'- -CGGaGCa--UGCCCCGGga----GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 20289 0.77 0.204469
Target:  5'- uCUUCc--CGGGGCCC-CGGGCGCCCg -3'
miRNA:   3'- cGGAGcauGCCCCGGGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 20441 0.7 0.498075
Target:  5'- uCUUCGUcggaGCGGGGCUCggggguGGCGCCg -3'
miRNA:   3'- cGGAGCA----UGCCCCGGGagu---UCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.