miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 726 0.67 0.67331
Target:  5'- gGUCcgCGgGCGGGGgCUUCcgcuccgcGGCGCCCg -3'
miRNA:   3'- -CGGa-GCaUGCCCCgGGAGu-------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 2168 0.72 0.361216
Target:  5'- uCCUCGc-CGGGGCCggCcccGGCGCCCg -3'
miRNA:   3'- cGGAGCauGCCCCGGgaGu--UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 2281 0.69 0.526332
Target:  5'- gGCCg---GCGGGGCgCCcgCGgcggcgacGGCGCCCg -3'
miRNA:   3'- -CGGagcaUGCCCCG-GGa-GU--------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 2335 0.69 0.535886
Target:  5'- gGCCUCG-GCGucGGGCUC-CAgcAGCGCCg -3'
miRNA:   3'- -CGGAGCaUGC--CCCGGGaGU--UCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 2382 0.69 0.555169
Target:  5'- -aCUCGgcCGGcaGGCCCUCGGG-GCCg -3'
miRNA:   3'- cgGAGCauGCC--CCGGGAGUUCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 2621 0.7 0.47962
Target:  5'- aCCgggGUcCGGGGCCCggcgCGGGUGCUCa -3'
miRNA:   3'- cGGag-CAuGCCCCGGGa---GUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 2869 0.67 0.683126
Target:  5'- gGCCgggcCGUccGCGGGccaGUCCUCGauGGUGUCCa -3'
miRNA:   3'- -CGGa---GCA--UGCCC---CGGGAGU--UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 3113 0.67 0.683126
Target:  5'- cGCCgCG-GCGcGGGUCC-CAggccgggcgcggGGCGCCCu -3'
miRNA:   3'- -CGGaGCaUGC-CCCGGGaGU------------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 3449 0.76 0.209416
Target:  5'- cGCCgUCGggcGCGGGGUgCUCGGGCauggGCCCg -3'
miRNA:   3'- -CGG-AGCa--UGCCCCGgGAGUUCG----CGGG- -5'
29399 5' -60.5 NC_006151.1 + 3671 0.67 0.683126
Target:  5'- cGCCgucccCGggGCGGcgGGCCC-CGGGCGCgCg -3'
miRNA:   3'- -CGGa----GCa-UGCC--CCGGGaGUUCGCGgG- -5'
29399 5' -60.5 NC_006151.1 + 4043 0.73 0.331328
Target:  5'- gGCCUCGcggGCGcGGGCCC-CGuccacgcuguAGCGCaCCa -3'
miRNA:   3'- -CGGAGCa--UGC-CCCGGGaGU----------UCGCG-GG- -5'
29399 5' -60.5 NC_006151.1 + 4245 0.66 0.740911
Target:  5'- aGCCggagCGgGCaGGGCag-CAGGCGCUCg -3'
miRNA:   3'- -CGGa---GCaUGcCCCGggaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 4736 0.67 0.683126
Target:  5'- gGCCUCGUGCuGcuUCCUCGAGUcCCCc -3'
miRNA:   3'- -CGGAGCAUGcCccGGGAGUUCGcGGG- -5'
29399 5' -60.5 NC_006151.1 + 4833 0.67 0.672326
Target:  5'- uCCUCGUcccagagccccucGCGGGaGUCC-CcGGCGCCg -3'
miRNA:   3'- cGGAGCA-------------UGCCC-CGGGaGuUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 5074 0.7 0.488807
Target:  5'- gGCCgagGgccGCGGGGCCgCggCGGGCGCCg -3'
miRNA:   3'- -CGGag-Ca--UGCCCCGG-Ga-GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 5337 0.66 0.740911
Target:  5'- gGCCgcggCGga-GGGcGCCCUCuccGGCGCg- -3'
miRNA:   3'- -CGGa---GCaugCCC-CGGGAGu--UCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 5369 0.71 0.408616
Target:  5'- cGCCg---GCGGGGCUgUCucugcggGGGCGCCCc -3'
miRNA:   3'- -CGGagcaUGCCCCGGgAG-------UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 5499 0.67 0.663462
Target:  5'- gGUUggaGgagACGGGGCUC-CGGGCGCCa -3'
miRNA:   3'- -CGGag-Ca--UGCCCCGGGaGUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 5546 0.69 0.516842
Target:  5'- cGCCUCGcgGCGgcGGGCUCgucgagCAGGgGCUCg -3'
miRNA:   3'- -CGGAGCa-UGC--CCCGGGa-----GUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 5914 0.72 0.384835
Target:  5'- uGCCggggucggCGgcCGGGGCCCg-GAGCcgGCCCg -3'
miRNA:   3'- -CGGa-------GCauGCCCCGGGagUUCG--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.