miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 119671 1.12 0.000703
Target:  5'- cGCCUCGUACGGGGCCCUCAAGCGCCCc -3'
miRNA:   3'- -CGGAGCAUGCCCCGGGAGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 65031 0.85 0.053481
Target:  5'- aCCUCGUACggcagGGGGCCCggcggcggCGGGCGCCCg -3'
miRNA:   3'- cGGAGCAUG-----CCCCGGGa-------GUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 104926 0.78 0.160364
Target:  5'- aCCgCG-ACGGGGCCCUCGAGCugGCCa -3'
miRNA:   3'- cGGaGCaUGCCCCGGGAGUUCG--CGGg -5'
29399 5' -60.5 NC_006151.1 + 37976 0.77 0.185684
Target:  5'- cGCCUgCGUccuggccugccGCGGcGUCCUCGAGCGCCUg -3'
miRNA:   3'- -CGGA-GCA-----------UGCCcCGGGAGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 81353 0.77 0.194878
Target:  5'- cGCCgCGccCGGGGCCCcggCGGGCGCCa -3'
miRNA:   3'- -CGGaGCauGCCCCGGGa--GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 63751 0.77 0.199623
Target:  5'- cGCgUCG-GCGGGGCguCCUC-GGCGCCCc -3'
miRNA:   3'- -CGgAGCaUGCCCCG--GGAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 20289 0.77 0.204469
Target:  5'- uCUUCc--CGGGGCCC-CGGGCGCCCg -3'
miRNA:   3'- cGGAGcauGCCCCGGGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 3449 0.76 0.209416
Target:  5'- cGCCgUCGggcGCGGGGUgCUCGGGCauggGCCCg -3'
miRNA:   3'- -CGG-AGCa--UGCCCCGgGAGUUCG----CGGG- -5'
29399 5' -60.5 NC_006151.1 + 93750 0.76 0.214465
Target:  5'- gGCCUCGU-CGGGGCgCg-GGGCGUCCc -3'
miRNA:   3'- -CGGAGCAuGCCCCGgGagUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 81275 0.76 0.224878
Target:  5'- cGCCUCG-GCGGGGaUCUCGGGCGCg- -3'
miRNA:   3'- -CGGAGCaUGCCCCgGGAGUUCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 27262 0.76 0.235165
Target:  5'- gGCC-CGUAcuCGGGGUgCUCGacgacguAGCGCCCg -3'
miRNA:   3'- -CGGaGCAU--GCCCCGgGAGU-------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 40070 0.75 0.2413
Target:  5'- gGCC-C--GCGGGGgCCUCGGGCGCCg -3'
miRNA:   3'- -CGGaGcaUGCCCCgGGAGUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 57341 0.75 0.252794
Target:  5'- aGCCgacaaaGUccGCGGGGCCCUC--GCGCCg -3'
miRNA:   3'- -CGGag----CA--UGCCCCGGGAGuuCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 86797 0.75 0.258708
Target:  5'- uGCCUaaaaGCGGGGCCUccCcGGCGCCCg -3'
miRNA:   3'- -CGGAgca-UGCCCCGGGa-GuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 114234 0.75 0.258708
Target:  5'- gGCCUCGguggccgcGCGGGacCCCUCGGagcGCGCCCu -3'
miRNA:   3'- -CGGAGCa-------UGCCCc-GGGAGUU---CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 63998 0.75 0.264735
Target:  5'- cGUCUgCGUGCGGugcGGCgC-CAGGCGCCCg -3'
miRNA:   3'- -CGGA-GCAUGCC---CCGgGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 63810 0.75 0.264735
Target:  5'- cGCCUCGcc--GGGCCCcgGGGCGCCCu -3'
miRNA:   3'- -CGGAGCaugcCCCGGGagUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 15067 0.73 0.31708
Target:  5'- cGCCUUcUGCGcGGCCCcCuGGCGCCCc -3'
miRNA:   3'- -CGGAGcAUGCcCCGGGaGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 18737 0.73 0.331328
Target:  5'- cGCgUCGUcgccgccgcCGGGGCCC-CAcggGGUGCCCg -3'
miRNA:   3'- -CGgAGCAu--------GCCCCGGGaGU---UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 4043 0.73 0.331328
Target:  5'- gGCCUCGcggGCGcGGGCCC-CGuccacgcuguAGCGCaCCa -3'
miRNA:   3'- -CGGAGCa--UGC-CCCGGGaGU----------UCGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.