miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 142313 0.73 0.346041
Target:  5'- aGCgC-CGUAUgGGGGCCCgcgCGcucgcGGCGCCCg -3'
miRNA:   3'- -CG-GaGCAUG-CCCCGGGa--GU-----UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 101218 0.73 0.353571
Target:  5'- gGCCaggCGUggACGGGGCCCggcgggggCAuguGCGCCa -3'
miRNA:   3'- -CGGa--GCA--UGCCCCGGGa-------GUu--CGCGGg -5'
29399 5' -60.5 NC_006151.1 + 2168 0.72 0.361216
Target:  5'- uCCUCGc-CGGGGCCggCcccGGCGCCCg -3'
miRNA:   3'- cGGAGCauGCCCCGGgaGu--UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 59936 0.72 0.361216
Target:  5'- cGCCgucagCG-GCGGcucgcaGCCCUCGAGCGCCa -3'
miRNA:   3'- -CGGa----GCaUGCCc-----CGGGAGUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 19829 0.72 0.368976
Target:  5'- aCCUCGgugACGGGGCCCg-GGGuCGUCUc -3'
miRNA:   3'- cGGAGCa--UGCCCCGGGagUUC-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 100466 0.72 0.376057
Target:  5'- cGCUgcgcgaGUGCGaggcgcuGGGCCUgCAGGCGCCCg -3'
miRNA:   3'- -CGGag----CAUGC-------CCCGGGaGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 13181 0.72 0.376849
Target:  5'- cGCCgcggcCGUcuCGGGGCCCgc-GGCGCCg -3'
miRNA:   3'- -CGGa----GCAu-GCCCCGGGaguUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 5914 0.72 0.384835
Target:  5'- uGCCggggucggCGgcCGGGGCCCg-GAGCcgGCCCg -3'
miRNA:   3'- -CGGa-------GCauGCCCCGGGagUUCG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 38921 0.72 0.384835
Target:  5'- cGCCUCGUGgaccaGGaGGUCUUCcccgaacucuGGCGCCCg -3'
miRNA:   3'- -CGGAGCAUg----CC-CCGGGAGu---------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 121445 0.72 0.38806
Target:  5'- gGCCUCGc-UGGuGCCCgcggagcuggggggCAAGCGCCCg -3'
miRNA:   3'- -CGGAGCauGCCcCGGGa-------------GUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 38202 0.72 0.392931
Target:  5'- cGCUacagCGUggACGGGGCCC----GCGCCCg -3'
miRNA:   3'- -CGGa---GCA--UGCCCCGGGaguuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 50850 0.72 0.392931
Target:  5'- cCCUCG-GCGGccGCCCUCccGCGCCCc -3'
miRNA:   3'- cGGAGCaUGCCc-CGGGAGuuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 52368 0.72 0.392931
Target:  5'- cGCCggcgCGccccCGGGGCCCgcgggggcggCGGGCGCCg -3'
miRNA:   3'- -CGGa---GCau--GCCCCGGGa---------GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 5369 0.71 0.408616
Target:  5'- cGCCg---GCGGGGCUgUCucugcggGGGCGCCCc -3'
miRNA:   3'- -CGGagcaUGCCCCGGgAG-------UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 100236 0.71 0.417874
Target:  5'- gGCCgagCGcgUGGuGGCgCUCGAGCGCCUc -3'
miRNA:   3'- -CGGa--GCauGCC-CCGgGAGUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 54434 0.71 0.417874
Target:  5'- cGCUUCGgcgACGaGGcGCCCgccguggcCGAGCGCCUc -3'
miRNA:   3'- -CGGAGCa--UGC-CC-CGGGa-------GUUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 20116 0.71 0.4264
Target:  5'- cGCCcCGgcgACGGGGCUggggggCGGGCGCCg -3'
miRNA:   3'- -CGGaGCa--UGCCCCGGga----GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 120345 0.71 0.4264
Target:  5'- cGCCcgCGUggccgggcucGCGGGcGCCUaCcAGCGCCCg -3'
miRNA:   3'- -CGGa-GCA----------UGCCC-CGGGaGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 83560 0.71 0.435028
Target:  5'- aUCUCGgGC-GGGCCCUCGAccgcGgGCCCg -3'
miRNA:   3'- cGGAGCaUGcCCCGGGAGUU----CgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 122882 0.71 0.443757
Target:  5'- aCC-CGgacCGGGccaaccgcgacGCCCUCGAGCGCCUc -3'
miRNA:   3'- cGGaGCau-GCCC-----------CGGGAGUUCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.