miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 141842 0.66 0.721916
Target:  5'- cGCgCUCGacgcgaGGGGCUCgcgccGCGCCCu -3'
miRNA:   3'- -CG-GAGCaug---CCCCGGGaguu-CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 137260 0.66 0.721916
Target:  5'- cGCCUCGcGCGcccGGuGCCCgCGGGCacGCUCg -3'
miRNA:   3'- -CGGAGCaUGC---CC-CGGGaGUUCG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 137614 0.66 0.716158
Target:  5'- gGCg-CGgGCGGGgaccccggcgccuccGCCCUCGuccGCGCCCc -3'
miRNA:   3'- -CGgaGCaUGCCC---------------CGGGAGUu--CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 18054 0.66 0.712306
Target:  5'- cGCagCGgggaGCGGGGuCCCUUggGgGCCa -3'
miRNA:   3'- -CGgaGCa---UGCCCC-GGGAGuuCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 19494 0.66 0.712306
Target:  5'- uGCCcCGcucCGGGGCCUcggggacgCAGGCgcgGCCCa -3'
miRNA:   3'- -CGGaGCau-GCCCCGGGa-------GUUCG---CGGG- -5'
29399 5' -60.5 NC_006151.1 + 139595 0.66 0.712306
Target:  5'- cGCCccccCGaGCGGcGGCCCgucCGGGCGCg- -3'
miRNA:   3'- -CGGa---GCaUGCC-CCGGGa--GUUCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 7281 0.66 0.712306
Target:  5'- cCCUCGgccaAUGGGGCCUcacggugCAAGCuUCCg -3'
miRNA:   3'- cGGAGCa---UGCCCCGGGa------GUUCGcGGG- -5'
29399 5' -60.5 NC_006151.1 + 17100 0.66 0.712306
Target:  5'- cGCC-CGU-CGGGGCgC-CGGGgGCuCCg -3'
miRNA:   3'- -CGGaGCAuGCCCCGgGaGUUCgCG-GG- -5'
29399 5' -60.5 NC_006151.1 + 54599 0.66 0.712306
Target:  5'- uGCCUCG-GCGuGGUCC-CGGuGCGCCg -3'
miRNA:   3'- -CGGAGCaUGCcCCGGGaGUU-CGCGGg -5'
29399 5' -60.5 NC_006151.1 + 127402 0.66 0.712306
Target:  5'- gGCCgagUCG-ACGGGaGCCCgCGgggucgccucGGCGCUCg -3'
miRNA:   3'- -CGG---AGCaUGCCC-CGGGaGU----------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 50708 0.66 0.712306
Target:  5'- cGCCUCGgcgACGGccGCCCcggcggUCcAGCuGCCCc -3'
miRNA:   3'- -CGGAGCa--UGCCc-CGGG------AGuUCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 81190 0.66 0.712306
Target:  5'- cGCCgagcgUGUACGccGGGCCgCagucCGGGCGCCg -3'
miRNA:   3'- -CGGa----GCAUGC--CCCGG-Ga---GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 75644 0.66 0.711341
Target:  5'- uGCCgUCGUcgGGGGCCggCUCGccgccgagcagguAGCGCgCCa -3'
miRNA:   3'- -CGG-AGCAugCCCCGG--GAGU-------------UCGCG-GG- -5'
29399 5' -60.5 NC_006151.1 + 37544 0.66 0.70941
Target:  5'- cCCUCGUgcgccucaucuacaGCGGGGCCgCcggCGAG-GCCa -3'
miRNA:   3'- cGGAGCA--------------UGCCCCGG-Ga--GUUCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 102638 0.66 0.702632
Target:  5'- cGCgCUCGa--GGcGGCgCUCGAGgcCGCCCa -3'
miRNA:   3'- -CG-GAGCaugCC-CCGgGAGUUC--GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 9117 0.66 0.702632
Target:  5'- cGCCUCGcacuCGcccgacacucGGCCCgcggCAcGCGCCCa -3'
miRNA:   3'- -CGGAGCau--GCc---------CCGGGa---GUuCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 43945 0.66 0.702632
Target:  5'- gGCCg-----GGGGCCCUCcccGGCcGCCCc -3'
miRNA:   3'- -CGGagcaugCCCCGGGAGu--UCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 69317 0.66 0.702632
Target:  5'- cGCCacaCGUGCGcGGGCgCgUCGc-CGCCCg -3'
miRNA:   3'- -CGGa--GCAUGC-CCCG-GgAGUucGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 122799 0.66 0.702632
Target:  5'- gGCCUCGcccgACGa-GCgCCUCgAGGCGCUCa -3'
miRNA:   3'- -CGGAGCa---UGCccCG-GGAG-UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 18307 0.66 0.702632
Target:  5'- aGCCg-GaGCGGGGCgCCUCcucgGGGCGCa- -3'
miRNA:   3'- -CGGagCaUGCCCCG-GGAG----UUCGCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.