miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 122799 0.66 0.702632
Target:  5'- gGCCUCGcccgACGa-GCgCCUCgAGGCGCUCa -3'
miRNA:   3'- -CGGAGCa---UGCccCG-GGAG-UUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 131551 0.66 0.702632
Target:  5'- cGCCUCGgGCGccgcacGGGCCC-CGcGuCGCUCa -3'
miRNA:   3'- -CGGAGCaUGC------CCCGGGaGUuC-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 136282 0.66 0.701661
Target:  5'- gGCCUaCGaccUGC-GGGCCCUCAAGgaccugcUGCUCa -3'
miRNA:   3'- -CGGA-GC---AUGcCCCGGGAGUUC-------GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 64075 0.66 0.692903
Target:  5'- uGCCg-GUGCGcGGGUCCagcAGCaGCCCg -3'
miRNA:   3'- -CGGagCAUGC-CCCGGGaguUCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 127530 0.66 0.692903
Target:  5'- gGCg-CGUcaGCGGGGCCCaggGGGCGUCg -3'
miRNA:   3'- -CGgaGCA--UGCCCCGGGag-UUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 48272 0.66 0.692903
Target:  5'- aCC-CGcUGCuGGG-CCUCGAGCcGCCCg -3'
miRNA:   3'- cGGaGC-AUGcCCCgGGAGUUCG-CGGG- -5'
29399 5' -60.5 NC_006151.1 + 73776 0.66 0.692903
Target:  5'- gGCa-CGUGCuGGGCggcggcgcgcaCCUC-GGCGCCCa -3'
miRNA:   3'- -CGgaGCAUGcCCCG-----------GGAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 118737 0.66 0.692903
Target:  5'- gGCUaCGUGCuGGGCCC---GGCGgCCg -3'
miRNA:   3'- -CGGaGCAUGcCCCGGGaguUCGCgGG- -5'
29399 5' -60.5 NC_006151.1 + 39857 0.66 0.692903
Target:  5'- gGCCUCGccgagcucCGcGGCCC-CGAGgGCCUg -3'
miRNA:   3'- -CGGAGCau------GCcCCGGGaGUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 59355 0.66 0.692903
Target:  5'- gGCCgcgCGcACGGGGCgCCgcgCGGccgucgucGCGUCCa -3'
miRNA:   3'- -CGGa--GCaUGCCCCG-GGa--GUU--------CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 123088 0.66 0.692903
Target:  5'- cGCCU-GUACGcGGaccGCCuCUCGcGGCGCUCg -3'
miRNA:   3'- -CGGAgCAUGC-CC---CGG-GAGU-UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 17933 0.66 0.692903
Target:  5'- cGCCcaUCaGgcaGCGGcGGCgUCUCcGGCGCCCg -3'
miRNA:   3'- -CGG--AG-Ca--UGCC-CCG-GGAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 128798 0.66 0.691927
Target:  5'- cGCCUCGgcgagcGCGGcgcgcguGGCCC-CGuacgcGGCGCUCu -3'
miRNA:   3'- -CGGAGCa-----UGCC-------CCGGGaGU-----UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 4736 0.67 0.683126
Target:  5'- gGCCUCGUGCuGcuUCCUCGAGUcCCCc -3'
miRNA:   3'- -CGGAGCAUGcCccGGGAGUUCGcGGG- -5'
29399 5' -60.5 NC_006151.1 + 13985 0.67 0.683126
Target:  5'- gGCCcgCGUcccCGGGGCCCacgugUGAG-GCCCc -3'
miRNA:   3'- -CGGa-GCAu--GCCCCGGGa----GUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 36607 0.67 0.683126
Target:  5'- aGCCUCccccgccGCcGGGCCgguCUC-GGCGCCCg -3'
miRNA:   3'- -CGGAGca-----UGcCCCGG---GAGuUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 83760 0.67 0.683126
Target:  5'- cGCCaUCGgcuCGGGcacguacagcGCCCcgcCGAGCGCCa -3'
miRNA:   3'- -CGG-AGCau-GCCC----------CGGGa--GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 132664 0.67 0.683126
Target:  5'- aCCUCGUccGCGGaGGCCgaCAgcaugaccaGGCGCgCg -3'
miRNA:   3'- cGGAGCA--UGCC-CCGGgaGU---------UCGCGgG- -5'
29399 5' -60.5 NC_006151.1 + 135081 0.67 0.683126
Target:  5'- uCCUCGggcgggggcgGCGGGGCCgggCGGGCGgCg -3'
miRNA:   3'- cGGAGCa---------UGCCCCGGga-GUUCGCgGg -5'
29399 5' -60.5 NC_006151.1 + 117801 0.67 0.683126
Target:  5'- cGCC-CGgcgggGCGGGGCCCcacgcuUUAAGa-CCCg -3'
miRNA:   3'- -CGGaGCa----UGCCCCGGG------AGUUCgcGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.