miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29399 5' -60.5 NC_006151.1 + 142313 0.73 0.346041
Target:  5'- aGCgC-CGUAUgGGGGCCCgcgCGcucgcGGCGCCCg -3'
miRNA:   3'- -CG-GaGCAUG-CCCCGGGa--GU-----UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 141842 0.66 0.721916
Target:  5'- cGCgCUCGacgcgaGGGGCUCgcgccGCGCCCu -3'
miRNA:   3'- -CG-GAGCaug---CCCCGGGaguu-CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 141640 0.69 0.516842
Target:  5'- uGCCgcggCGgcgcgGCGGGGCCC-CGcGgGCUCg -3'
miRNA:   3'- -CGGa---GCa----UGCCCCGGGaGUuCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 139595 0.66 0.712306
Target:  5'- cGCCccccCGaGCGGcGGCCCgucCGGGCGCg- -3'
miRNA:   3'- -CGGa---GCaUGCC-CCGGGa--GUUCGCGgg -5'
29399 5' -60.5 NC_006151.1 + 138170 0.69 0.555169
Target:  5'- gGCCuUCGUgGCGGacguGGCCau--GGCGCCCg -3'
miRNA:   3'- -CGG-AGCA-UGCC----CCGGgaguUCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 137614 0.66 0.716158
Target:  5'- gGCg-CGgGCGGGgaccccggcgccuccGCCCUCGuccGCGCCCc -3'
miRNA:   3'- -CGgaGCaUGCCC---------------CGGGAGUu--CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 137260 0.66 0.721916
Target:  5'- cGCCUCGcGCGcccGGuGCCCgCGGGCacGCUCg -3'
miRNA:   3'- -CGGAGCaUGC---CC-CGGGaGUUCG--CGGG- -5'
29399 5' -60.5 NC_006151.1 + 136694 0.68 0.623912
Target:  5'- cGCCaCGUGCGGGcGCagCUCAAcauccgcgacacGuCGCCCa -3'
miRNA:   3'- -CGGaGCAUGCCC-CGg-GAGUU------------C-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 136412 0.68 0.584451
Target:  5'- gGCUaCGcGCGGGGCCCcgCGgcGGCGCacgCCg -3'
miRNA:   3'- -CGGaGCaUGCCCCGGGa-GU--UCGCG---GG- -5'
29399 5' -60.5 NC_006151.1 + 136352 0.67 0.643704
Target:  5'- gGCCUgGaccccGCGGGGCUgcuCUCGuucgcGGCGCUCu -3'
miRNA:   3'- -CGGAgCa----UGCCCCGG---GAGU-----UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 136282 0.66 0.701661
Target:  5'- gGCCUaCGaccUGC-GGGCCCUCAAGgaccugcUGCUCa -3'
miRNA:   3'- -CGGA-GC---AUGcCCCGGGAGUUC-------GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 136013 0.7 0.488807
Target:  5'- gGCCUCaucGCGGcccugaccauGGUCCUCGAgcagguGCGCCCg -3'
miRNA:   3'- -CGGAGca-UGCC----------CCGGGAGUU------CGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 135951 0.67 0.67331
Target:  5'- cCCUCGcggcGCGGGacGUCCUCGAG-GCCa -3'
miRNA:   3'- cGGAGCa---UGCCC--CGGGAGUUCgCGGg -5'
29399 5' -60.5 NC_006151.1 + 135156 0.7 0.507422
Target:  5'- aGCC-CGgcggGCGcGGCCCggaCGGGCGCCg -3'
miRNA:   3'- -CGGaGCa---UGCcCCGGGa--GUUCGCGGg -5'
29399 5' -60.5 NC_006151.1 + 135081 0.67 0.683126
Target:  5'- uCCUCGggcgggggcgGCGGGGCCgggCGGGCGgCg -3'
miRNA:   3'- cGGAGCa---------UGCCCCGGga-GUUCGCgGg -5'
29399 5' -60.5 NC_006151.1 + 132709 0.69 0.559051
Target:  5'- uCCUCGUugcCGGgcaggcacgagaaaGGUCCUCGuuccagcgcuccauGGCGCCCa -3'
miRNA:   3'- cGGAGCAu--GCC--------------CCGGGAGU--------------UCGCGGG- -5'
29399 5' -60.5 NC_006151.1 + 132664 0.67 0.683126
Target:  5'- aCCUCGUccGCGGaGGCCgaCAgcaugaccaGGCGCgCg -3'
miRNA:   3'- cGGAGCA--UGCC-CCGGgaGU---------UCGCGgG- -5'
29399 5' -60.5 NC_006151.1 + 131551 0.66 0.702632
Target:  5'- cGCCUCGgGCGccgcacGGGCCC-CGcGuCGCUCa -3'
miRNA:   3'- -CGGAGCaUGC------CCCGGGaGUuC-GCGGG- -5'
29399 5' -60.5 NC_006151.1 + 130706 0.7 0.461504
Target:  5'- gGCC-CG-ACGGGGCggCC-CGGGgGCCCg -3'
miRNA:   3'- -CGGaGCaUGCCCCG--GGaGUUCgCGGG- -5'
29399 5' -60.5 NC_006151.1 + 129991 0.66 0.731453
Target:  5'- gGCCUCGUcguCGGGGauguCCgagacggCGcGCGCCa -3'
miRNA:   3'- -CGGAGCAu--GCCCCg---GGa------GUuCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.