miRNA display CGI


Results 61 - 80 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 28800 0.71 0.237592
Target:  5'- cGGcccgcgGGaCGGGCGUCCgGGACCGgccaaugcgggccCCGGGg -3'
miRNA:   3'- aCCa-----CC-GCCCGCGGG-CCUGGU-------------GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 33198 0.71 0.238126
Target:  5'- aUGGccGGCcGGCGCCCccGGAgCACgCGGGg -3'
miRNA:   3'- -ACCa-CCGcCCGCGGG--CCUgGUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 3826 0.71 0.243529
Target:  5'- uUGGUgcuGGCGGGgcuggaggGCCCGGA--GCCGGGg -3'
miRNA:   3'- -ACCA---CCGCCCg-------CGGGCCUggUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 33270 0.71 0.243529
Target:  5'- cGGUGGCGGcggccauCGCCC-GACCcuuccCCGGGg -3'
miRNA:   3'- aCCACCGCCc------GCGGGcCUGGu----GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 122173 0.71 0.249033
Target:  5'- cGGcGGCGGGCuCgUGGuGCCGCCGGa -3'
miRNA:   3'- aCCaCCGCCCGcGgGCC-UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 54060 0.71 0.249033
Target:  5'- aGGUGGCGuugguGGCGCgCGGACCcuCUGcGGc -3'
miRNA:   3'- aCCACCGC-----CCGCGgGCCUGGu-GGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 100804 0.7 0.254639
Target:  5'- aGGUGGCGGGCGacggcgaggCGGGCC-CCGa- -3'
miRNA:   3'- aCCACCGCCCGCgg-------GCCUGGuGGCcc -5'
29400 3' -66.3 NC_006151.1 + 36517 0.7 0.254639
Target:  5'- cGGgccGGCGGcGCgGCCuCGGACC-CCGGc -3'
miRNA:   3'- aCCa--CCGCC-CG-CGG-GCCUGGuGGCCc -5'
29400 3' -66.3 NC_006151.1 + 21411 0.7 0.254639
Target:  5'- gGGcGGUGcGGCGUCuCGGGCC-UCGGGg -3'
miRNA:   3'- aCCaCCGC-CCGCGG-GCCUGGuGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 9696 0.7 0.254639
Target:  5'- cGGccGCGGGUGCCCGGGaga-CGGGa -3'
miRNA:   3'- aCCacCGCCCGCGGGCCUggugGCCC- -5'
29400 3' -66.3 NC_006151.1 + 17275 0.7 0.258624
Target:  5'- cGGgGGCGGGCuGauacggaggggcucCCCGGGcuucgagccguCCGCCGGGg -3'
miRNA:   3'- aCCaCCGCCCG-C--------------GGGCCU-----------GGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 130681 0.7 0.260348
Target:  5'- cGG-GGCGcGGCGCa-GGAUguCCGGGg -3'
miRNA:   3'- aCCaCCGC-CCGCGggCCUGguGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 69738 0.7 0.266161
Target:  5'- -uGUGGCcccccGCGgCCGcGACCGCCGGGg -3'
miRNA:   3'- acCACCGcc---CGCgGGC-CUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 66867 0.7 0.266161
Target:  5'- cGG-GGCGGcgcgaagggcGCGCCCGGcCCcgcGCCGGa -3'
miRNA:   3'- aCCaCCGCC----------CGCGGGCCuGG---UGGCCc -5'
29400 3' -66.3 NC_006151.1 + 39627 0.7 0.266161
Target:  5'- cGGUGaGCacccgcgccGGGC-CCCGGACC-CCGGu -3'
miRNA:   3'- aCCAC-CG---------CCCGcGGGCCUGGuGGCCc -5'
29400 3' -66.3 NC_006151.1 + 95123 0.7 0.272079
Target:  5'- aUGGcGGCGuugaGGCG-CCGcGCCGCCGGGu -3'
miRNA:   3'- -ACCaCCGC----CCGCgGGCcUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 3013 0.7 0.272079
Target:  5'- aGGcGGCcgaugucgGGGCGCCCGGuCCAguucCCGGc -3'
miRNA:   3'- aCCaCCG--------CCCGCGGGCCuGGU----GGCCc -5'
29400 3' -66.3 NC_006151.1 + 99588 0.7 0.272079
Target:  5'- aGGUGGC-GGCGgCCGaGcGCCgcGCCGGGc -3'
miRNA:   3'- aCCACCGcCCGCgGGC-C-UGG--UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 88190 0.7 0.276284
Target:  5'- cGGUgucGGCGGcGUGgUCGGACCAggcgaggcgcgccuCCGGGg -3'
miRNA:   3'- aCCA---CCGCC-CGCgGGCCUGGU--------------GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 131649 0.7 0.278102
Target:  5'- aGGUGGuCGGGCGCCgCagauccGACCGCgCGcGGc -3'
miRNA:   3'- aCCACC-GCCCGCGG-Gc-----CUGGUG-GC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.