miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 3944 0.73 0.184687
Target:  5'- cGG-GcGCGGGCuccgcggGCCCGGGCCGCgCGGcGg -3'
miRNA:   3'- aCCaC-CGCCCG-------CGGGCCUGGUG-GCC-C- -5'
29400 3' -66.3 NC_006151.1 + 102888 0.72 0.188593
Target:  5'- cGGUGGCGGGCcugcgccGCCuCGucgacucgcuggcGGCCGCCGaGGa -3'
miRNA:   3'- aCCACCGCCCG-------CGG-GC-------------CUGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 19268 0.72 0.18947
Target:  5'- cGG-GGCucguGGCGCgCGGGgcCCACCGGGg -3'
miRNA:   3'- aCCaCCGc---CCGCGgGCCU--GGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 87313 0.72 0.18947
Target:  5'- -cGUGGCGcacgccgugccGGCGCucCCGGGCCuGCCGGGc -3'
miRNA:   3'- acCACCGC-----------CCGCG--GGCCUGG-UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 3866 0.72 0.193913
Target:  5'- cGGaGG-GGGCGCCCGccGCCGCCGGc -3'
miRNA:   3'- aCCaCCgCCCGCGGGCc-UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 55433 0.72 0.193913
Target:  5'- ---aGGCGGGCGCggacgggaCCGGcGCCGCCGGc -3'
miRNA:   3'- accaCCGCCCGCG--------GGCC-UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 78135 0.72 0.193913
Target:  5'- cGGgccGCGGGCGCCuCGGacgacgccucgGCCGCCGuGGu -3'
miRNA:   3'- aCCac-CGCCCGCGG-GCC-----------UGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 6496 0.72 0.196622
Target:  5'- cGGUGGguCGGGCGUCCGucgagggcugauaGCCGCCGGa -3'
miRNA:   3'- aCCACC--GCCCGCGGGCc------------UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 63511 0.72 0.198447
Target:  5'- aGGUGG-GGGCGCgCgGGGCgGUCGGGg -3'
miRNA:   3'- aCCACCgCCCGCG-GgCCUGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 97288 0.72 0.212605
Target:  5'- cGGcGGCGGGCGUguugagCCGGcCCGUCGGGc -3'
miRNA:   3'- aCCaCCGCCCGCG------GGCCuGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 20104 0.72 0.212605
Target:  5'- cUGGgGGaCGGGCGCCCcGGCgACgGGGn -3'
miRNA:   3'- -ACCaCC-GCCCGCGGGcCUGgUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 102113 0.71 0.216524
Target:  5'- cGcGUGcGCGGGCcggagccuguucCCCGGGCgCGCCGGGc -3'
miRNA:   3'- aC-CAC-CGCCCGc-----------GGGCCUG-GUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 40076 0.71 0.217514
Target:  5'- cGGgGGCcucGGGCGCCgGGGCCGgccCCGGc -3'
miRNA:   3'- aCCaCCG---CCCGCGGgCCUGGU---GGCCc -5'
29400 3' -66.3 NC_006151.1 + 59297 0.71 0.222519
Target:  5'- ---cGGCGuGGCGCCCGcGGCuCAgCGGGc -3'
miRNA:   3'- accaCCGC-CCGCGGGC-CUG-GUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 122315 0.71 0.222519
Target:  5'- cGGcagcUGGCGGuGCGCgUGGACC-CCGaGGa -3'
miRNA:   3'- aCC----ACCGCC-CGCGgGCCUGGuGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 5113 0.71 0.227623
Target:  5'- cGGUGGCggcccggcgcGGGCGagUGGGgCGCCGGGc -3'
miRNA:   3'- aCCACCG----------CCCGCggGCCUgGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 102201 0.71 0.227623
Target:  5'- cUGGUGGagaacGGCGCCCGcacCCACgGGGa -3'
miRNA:   3'- -ACCACCgc---CCGCGGGCcu-GGUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 133312 0.71 0.232825
Target:  5'- cGGgGGCGgcccgugucgaGGCGCgCCGGGCgGCCGGu -3'
miRNA:   3'- aCCaCCGC-----------CCGCG-GGCCUGgUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 103906 0.71 0.232825
Target:  5'- cUGGaGGUGGcGCGCgCGG-CCGCCGuGGa -3'
miRNA:   3'- -ACCaCCGCC-CGCGgGCCuGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 54604 0.71 0.232825
Target:  5'- ---cGGCGuGGU-CCCGGugCGCCGGGc -3'
miRNA:   3'- accaCCGC-CCGcGGGCCugGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.