miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 96908 0.74 0.139425
Target:  5'- cUGGgcggGGCGGGacaaGCCgGGACgGgCCGGGa -3'
miRNA:   3'- -ACCa---CCGCCCg---CGGgCCUGgU-GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 119250 0.74 0.142799
Target:  5'- aGGUGGC-GGCGCCCu-ACCugGCCGGGa -3'
miRNA:   3'- aCCACCGcCCGCGGGccUGG--UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 108430 0.74 0.142799
Target:  5'- aGGUGGCGGGagccgccucCCCGGGCCGCCc-- -3'
miRNA:   3'- aCCACCGCCCgc-------GGGCCUGGUGGccc -5'
29400 3' -66.3 NC_006151.1 + 90736 0.74 0.146248
Target:  5'- cGGUGGCGgcGGCGCCCucgGGGgCGgCGGGc -3'
miRNA:   3'- aCCACCGC--CCGCGGG---CCUgGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8161 0.74 0.146248
Target:  5'- aGG-GGCGGG-GCCCaaaauGGACCucggGCCGGGa -3'
miRNA:   3'- aCCaCCGCCCgCGGG-----CCUGG----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 55470 0.74 0.151204
Target:  5'- cGGggGGCGcGCGCCCGGcgccgcggacggccaGCCGCCGcGGg -3'
miRNA:   3'- aCCa-CCGCcCGCGGGCC---------------UGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 41514 0.74 0.157055
Target:  5'- aUGG-GGCGGGCGCCgCGGAgcggaagcccCCGcCCGcGGa -3'
miRNA:   3'- -ACCaCCGCCCGCGG-GCCU----------GGU-GGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 32347 0.74 0.157055
Target:  5'- aGGcccgaGGCgccgGGGCuuucuuCCCGGACCGCCGGGg -3'
miRNA:   3'- aCCa----CCG----CCCGc-----GGGCCUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 135160 0.73 0.159678
Target:  5'- ---cGGCGGGCGCggcccggacgggcgCCGGcugccGCCGCCGGGc -3'
miRNA:   3'- accaCCGCCCGCG--------------GGCC-----UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 23911 0.73 0.160814
Target:  5'- cGGUcGCGGGC-CCgaCGGGCCGCCGGu -3'
miRNA:   3'- aCCAcCGCCCGcGG--GCCUGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 17088 0.73 0.160814
Target:  5'- gGGUcaGGCGcGCGCCCgucGGGgCGCCGGGg -3'
miRNA:   3'- aCCA--CCGCcCGCGGG---CCUgGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 125253 0.73 0.160814
Target:  5'- cGGcccGGCGGGgaCGCCCGaGCCGCCGGc -3'
miRNA:   3'- aCCa--CCGCCC--GCGGGCcUGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 5250 0.73 0.163494
Target:  5'- cGGcGGCGGGgGCCCGGggggcggagggcgaGCgGgCCGGGg -3'
miRNA:   3'- aCCaCCGCCCgCGGGCC--------------UGgU-GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 64505 0.73 0.172584
Target:  5'- gGGcGGCGGGCGCgCGccgccaaaGGCCGCCGcGGc -3'
miRNA:   3'- aCCaCCGCCCGCGgGC--------CUGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 21315 0.73 0.172584
Target:  5'- cGGUGGCGcGaGaCGCCCGGcGCgGCgGGGg -3'
miRNA:   3'- aCCACCGC-C-C-GCGGGCC-UGgUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 5919 0.73 0.176676
Target:  5'- gGGUcGGCGGccgGgGCCCGGAgCCGgcCCGGGa -3'
miRNA:   3'- aCCA-CCGCC---CgCGGGCCU-GGU--GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5727 0.73 0.176676
Target:  5'- cUGGUGGCGccgggguccgaGGCcgcgccgccgGCCCGGGCUcaccgACCGGGu -3'
miRNA:   3'- -ACCACCGC-----------CCG----------CGGGCCUGG-----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 57978 0.73 0.180853
Target:  5'- cGGUgGGCGGcgagcGCGCCgCGGACCGCCu-- -3'
miRNA:   3'- aCCA-CCGCC-----CGCGG-GCCUGGUGGccc -5'
29400 3' -66.3 NC_006151.1 + 4200 0.73 0.180853
Target:  5'- aGGcaGGCGGGC-CCgaGGGCgGCCGGGg -3'
miRNA:   3'- aCCa-CCGCCCGcGGg-CCUGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 89739 0.73 0.183829
Target:  5'- cGGUGGUGGGCgagacgagcugguuGCCgCGGcCCACCaucuGGGa -3'
miRNA:   3'- aCCACCGCCCG--------------CGG-GCCuGGUGG----CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.