miRNA display CGI


Results 21 - 40 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 5250 0.73 0.163494
Target:  5'- cGGcGGCGGGgGCCCGGggggcggagggcgaGCgGgCCGGGg -3'
miRNA:   3'- aCCaCCGCCCgCGGGCC--------------UGgU-GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5342 0.67 0.404732
Target:  5'- cGGcGGaGGGCGCCCucuccggcgcGGcGCCGgCGGGg -3'
miRNA:   3'- aCCaCCgCCCGCGGG----------CC-UGGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5619 0.69 0.309814
Target:  5'- cGGaGG-GGGCGCCgccGCCGCCGGGc -3'
miRNA:   3'- aCCaCCgCCCGCGGgccUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5727 0.73 0.176676
Target:  5'- cUGGUGGCGccgggguccgaGGCcgcgccgccgGCCCGGGCUcaccgACCGGGu -3'
miRNA:   3'- -ACCACCGC-----------CCG----------CGGGCCUGG-----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5859 0.78 0.073849
Target:  5'- aGGgGGaCGaGCGCCCgGGGCCGCCGGGg -3'
miRNA:   3'- aCCaCC-GCcCGCGGG-CCUGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5919 0.73 0.176676
Target:  5'- gGGUcGGCGGccgGgGCCCGGAgCCGgcCCGGGa -3'
miRNA:   3'- aCCA-CCGCC---CgCGGGCCU-GGU--GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 6173 0.67 0.415184
Target:  5'- cGGcGGCGucgucggagaagaGGcCGCCCGGGCCgaagaggagauccucGCCGGa -3'
miRNA:   3'- aCCaCCGC-------------CC-GCGGGCCUGG---------------UGGCCc -5'
29400 3' -66.3 NC_006151.1 + 6496 0.72 0.196622
Target:  5'- cGGUGGguCGGGCGUCCGucgagggcugauaGCCGCCGGa -3'
miRNA:   3'- aCCACC--GCCCGCGGGCc------------UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 7027 0.66 0.471549
Target:  5'- cGGcGGCcaucucGGCucGCCCGGGCCAauGGGc -3'
miRNA:   3'- aCCaCCGc-----CCG--CGGGCCUGGUggCCC- -5'
29400 3' -66.3 NC_006151.1 + 7723 0.68 0.337112
Target:  5'- cGG-GGaCcGGCGaCCGGACCcgaACCGGGa -3'
miRNA:   3'- aCCaCC-GcCCGCgGGCCUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8161 0.74 0.146248
Target:  5'- aGG-GGCGGG-GCCCaaaauGGACCucggGCCGGGa -3'
miRNA:   3'- aCCaCCGCCCgCGGG-----CCUGG----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8247 0.7 0.284231
Target:  5'- aGGgccgGGCcGGCGCgCCGGgacGCCccuCCGGGg -3'
miRNA:   3'- aCCa---CCGcCCGCG-GGCC---UGGu--GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8578 0.66 0.480295
Target:  5'- gGGUgGGUGGGUGUgagggCCGGugCGaguaUGGGg -3'
miRNA:   3'- aCCA-CCGCCCGCG-----GGCCugGUg---GCCC- -5'
29400 3' -66.3 NC_006151.1 + 8647 0.66 0.454306
Target:  5'- cGGUGGUGcggguguuacuGGCGauaCCGGuACCgacgguggugGCCGGGc -3'
miRNA:   3'- aCCACCGC-----------CCGCg--GGCC-UGG----------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 8740 0.66 0.445813
Target:  5'- aGGaGGgGGGUGCCCGGGCgugucuCGCCu-- -3'
miRNA:   3'- aCCaCCgCCCGCGGGCCUG------GUGGccc -5'
29400 3' -66.3 NC_006151.1 + 9696 0.7 0.254639
Target:  5'- cGGccGCGGGUGCCCGGGaga-CGGGa -3'
miRNA:   3'- aCCacCGCCCGCGGGCCUggugGCCC- -5'
29400 3' -66.3 NC_006151.1 + 10417 0.67 0.412757
Target:  5'- gGGUGacgccGCGGGUgGgCCGaGGCCGgCGGGg -3'
miRNA:   3'- aCCAC-----CGCCCG-CgGGC-CUGGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 10973 0.68 0.381258
Target:  5'- gGuGUGGUGGGUGUCacgguGGAgCggGCCGGGg -3'
miRNA:   3'- aC-CACCGCCCGCGGg----CCUgG--UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 11040 0.66 0.462885
Target:  5'- cGGccGGcCGGGgGCCCGG-CCuggACgCGGGc -3'
miRNA:   3'- aCCa-CC-GCCCgCGGGCCuGG---UG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 13942 0.81 0.044736
Target:  5'- cGGgGGCGGGCGCCCcggGGACgCGCCGGc -3'
miRNA:   3'- aCCaCCGCCCGCGGG---CCUG-GUGGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.