miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 667 0.67 0.404732
Target:  5'- cGG-GGCGGGCuCCgCGGAUCGCauCGGc -3'
miRNA:   3'- aCCaCCGCCCGcGG-GCCUGGUG--GCCc -5'
29400 3' -66.3 NC_006151.1 + 1810 0.74 0.136124
Target:  5'- gGGaGGCaGGCGCCgGGgaggcaagcGCCGCCGGGc -3'
miRNA:   3'- aCCaCCGcCCGCGGgCC---------UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 2176 0.69 0.323248
Target:  5'- gGGgccGGCcccGGCGCCCGaGGCCcCCGcGGg -3'
miRNA:   3'- aCCa--CCGc--CCGCGGGC-CUGGuGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 2298 0.75 0.1175
Target:  5'- cGGcGGCGacGGCGCCCGGggucagcACCAgCGGGg -3'
miRNA:   3'- aCCaCCGC--CCGCGGGCC-------UGGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 2702 0.66 0.489119
Target:  5'- gGGUgcaGGCGGGCGaa-GGAggccuCCACgCGGGc -3'
miRNA:   3'- aCCA---CCGCCCGCgggCCU-----GGUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 2799 0.68 0.344205
Target:  5'- cGGgccaGCGcacGGCGCaCUGGGCgGCCGGGu -3'
miRNA:   3'- aCCac--CGC---CCGCG-GGCCUGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 3013 0.7 0.272079
Target:  5'- aGGcGGCcgaugucgGGGCGCCCGGuCCAguucCCGGc -3'
miRNA:   3'- aCCaCCG--------CCCGCGGGCCuGGU----GGCCc -5'
29400 3' -66.3 NC_006151.1 + 3271 0.67 0.396807
Target:  5'- cGGcGcGCGGcgauguGCGCCaGGGCgGCCGGGu -3'
miRNA:   3'- aCCaC-CGCC------CGCGGgCCUGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 3571 0.67 0.412757
Target:  5'- aGGgagcGGCGcuuGCGCCgGGGCCcCCGGu -3'
miRNA:   3'- aCCa---CCGCc--CGCGGgCCUGGuGGCCc -5'
29400 3' -66.3 NC_006151.1 + 3682 0.68 0.351405
Target:  5'- gGGcGGCGGGC-CCCGGG-CGCgCGGc -3'
miRNA:   3'- aCCaCCGCCCGcGGGCCUgGUG-GCCc -5'
29400 3' -66.3 NC_006151.1 + 3826 0.71 0.243529
Target:  5'- uUGGUgcuGGCGGGgcuggaggGCCCGGA--GCCGGGg -3'
miRNA:   3'- -ACCA---CCGCCCg-------CGGGCCUggUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 3866 0.72 0.193913
Target:  5'- cGGaGG-GGGCGCCCGccGCCGCCGGc -3'
miRNA:   3'- aCCaCCgCCCGCGGGCc-UGGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 3899 0.68 0.35871
Target:  5'- cUGGgacgacgaGGcCGGGCuGCUCGGGCCAgagCGGGg -3'
miRNA:   3'- -ACCa-------CC-GCCCG-CGGGCCUGGUg--GCCC- -5'
29400 3' -66.3 NC_006151.1 + 3944 0.73 0.184687
Target:  5'- cGG-GcGCGGGCuccgcggGCCCGGGCCGCgCGGcGg -3'
miRNA:   3'- aCCaC-CGCCCG-------CGGGCCUGGUG-GCC-C- -5'
29400 3' -66.3 NC_006151.1 + 4200 0.73 0.180853
Target:  5'- aGGcaGGCGGGC-CCgaGGGCgGCCGGGg -3'
miRNA:   3'- aCCa-CCGCCCGcGGg-CCUGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 4225 0.67 0.420879
Target:  5'- nGGcgcgGGCGGGCGC--GGGCaGCCGGa -3'
miRNA:   3'- aCCa---CCGCCCGCGggCCUGgUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 4606 0.66 0.445813
Target:  5'- -cGUGGCcgugGGGCGCgUGGACCcggcGCUGGc -3'
miRNA:   3'- acCACCG----CCCGCGgGCCUGG----UGGCCc -5'
29400 3' -66.3 NC_006151.1 + 4948 0.68 0.381258
Target:  5'- cGGUcGGCGGGgGCCCGucGGCCAUg--- -3'
miRNA:   3'- aCCA-CCGCCCgCGGGC--CUGGUGgccc -5'
29400 3' -66.3 NC_006151.1 + 5013 0.77 0.083592
Target:  5'- gGGgccgGGCGGGCuCCgGGGCCgggGCCGGGg -3'
miRNA:   3'- aCCa---CCGCCCGcGGgCCUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 5113 0.71 0.227623
Target:  5'- cGGUGGCggcccggcgcGGGCGagUGGGgCGCCGGGc -3'
miRNA:   3'- aCCACCG----------CCCGCggGCCUgGUGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.