miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 141596 0.66 0.462885
Target:  5'- ---gGGCGaGaGcCGCCCGGcgagGCUGCCGGGa -3'
miRNA:   3'- accaCCGC-C-C-GCGGGCC----UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 141380 0.69 0.309814
Target:  5'- cGGgGGCGGGC-CCCGGGCaaaCAgCGGc -3'
miRNA:   3'- aCCaCCGCCCGcGGGCCUG---GUgGCCc -5'
29400 3' -66.3 NC_006151.1 + 139654 0.66 0.454306
Target:  5'- gGGUcgcGGCGGGCGCgCCgcccgacaGGcCCugCGGc -3'
miRNA:   3'- aCCA---CCGCCCGCG-GG--------CCuGGugGCCc -5'
29400 3' -66.3 NC_006151.1 + 138499 0.67 0.396807
Target:  5'- ---cGGCGGGCGCCCGcugcACCuccucguccUCGGGg -3'
miRNA:   3'- accaCCGCCCGCGGGCc---UGGu--------GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 137740 0.66 0.489119
Target:  5'- cGGUGGCcGGCGCCgacaCGGuCCG-CGGc -3'
miRNA:   3'- aCCACCGcCCGCGG----GCCuGGUgGCCc -5'
29400 3' -66.3 NC_006151.1 + 137411 0.68 0.351405
Target:  5'- ---cGGgGGGCGCCCucgccGCCGCCGcGGg -3'
miRNA:   3'- accaCCgCCCGCGGGcc---UGGUGGC-CC- -5'
29400 3' -66.3 NC_006151.1 + 137071 0.66 0.437409
Target:  5'- gUGGagcUGGCGcaccGGCGCCaggccuucgCGGugCugGCCGGGg -3'
miRNA:   3'- -ACC---ACCGC----CCGCGG---------GCCugG--UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 136992 0.68 0.351405
Target:  5'- gGGcGGCGGGCGCgCGcGCacggCGCUGGGc -3'
miRNA:   3'- aCCaCCGCCCGCGgGCcUG----GUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 135621 0.66 0.454306
Target:  5'- ---cGGcCGcGGCGCCCGcACCACCcGGa -3'
miRNA:   3'- accaCC-GC-CCGCGGGCcUGGUGGcCC- -5'
29400 3' -66.3 NC_006151.1 + 135160 0.73 0.159678
Target:  5'- ---cGGCGGGCGCggcccggacgggcgCCGGcugccGCCGCCGGGc -3'
miRNA:   3'- accaCCGCCCGCG--------------GGCC-----UGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 134982 0.66 0.479417
Target:  5'- cGGgccuucucgGGCGGGCGCgucuuggCgGGGgCGCgGGGg -3'
miRNA:   3'- aCCa--------CCGCCCGCG-------GgCCUgGUGgCCC- -5'
29400 3' -66.3 NC_006151.1 + 134829 0.66 0.462885
Target:  5'- cGGUGGCGaccGCGCgCGcACaCACgCGGGg -3'
miRNA:   3'- aCCACCGCc--CGCGgGCcUG-GUG-GCCC- -5'
29400 3' -66.3 NC_006151.1 + 134266 0.67 0.429097
Target:  5'- aGGU-GCaGGCGauuguagcCCCGGGCCGCCcacGGGc -3'
miRNA:   3'- aCCAcCGcCCGC--------GGGCCUGGUGG---CCC- -5'
29400 3' -66.3 NC_006151.1 + 133371 0.75 0.123627
Target:  5'- gUGGUGGUGguGGCGgCCGGggcgGCgGCCGGGg -3'
miRNA:   3'- -ACCACCGC--CCGCgGGCC----UGgUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 133312 0.71 0.232825
Target:  5'- cGGgGGCGgcccgugucgaGGCGCgCCGGGCgGCCGGu -3'
miRNA:   3'- aCCaCCGC-----------CCGCG-GGCCUGgUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 131738 0.67 0.396807
Target:  5'- gGGUGGCGGGC-CCgGGcgagGCgACCGu- -3'
miRNA:   3'- aCCACCGCCCGcGGgCC----UGgUGGCcc -5'
29400 3' -66.3 NC_006151.1 + 131649 0.7 0.278102
Target:  5'- aGGUGGuCGGGCGCCgCagauccGACCGCgCGcGGc -3'
miRNA:   3'- aCCACC-GCCCGCGG-Gc-----CUGGUG-GC-CC- -5'
29400 3' -66.3 NC_006151.1 + 131092 0.68 0.351405
Target:  5'- aGGUaguccacgucGGCgGGGgGCCCGG-CCGCggcgCGGGa -3'
miRNA:   3'- aCCA----------CCG-CCCgCGGGCCuGGUG----GCCC- -5'
29400 3' -66.3 NC_006151.1 + 130954 0.69 0.309153
Target:  5'- gGGUcGcGCGGGCGCgggggccgguaccCCGG-CCGCCcGGGc -3'
miRNA:   3'- aCCA-C-CGCCCGCG-------------GGCCuGGUGG-CCC- -5'
29400 3' -66.3 NC_006151.1 + 130681 0.7 0.260348
Target:  5'- cGG-GGCGcGGCGCa-GGAUguCCGGGg -3'
miRNA:   3'- aCCaCCGC-CCGCGggCCUGguGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.