miRNA display CGI


Results 41 - 60 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29400 3' -66.3 NC_006151.1 + 27546 0.66 0.454306
Target:  5'- gGGgggGGgGGGgGgCUGGGCUgggacggggGCCGGGu -3'
miRNA:   3'- aCCa--CCgCCCgCgGGCCUGG---------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 96844 0.66 0.454306
Target:  5'- gGGgaaagGGCGGG-GaaaCCGcGcCCGCCGGGc -3'
miRNA:   3'- aCCa----CCGCCCgCg--GGC-CuGGUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 106674 0.66 0.454306
Target:  5'- ---aGGcCGcGGCGCUCGG-CgCGCCGGGc -3'
miRNA:   3'- accaCC-GC-CCGCGGGCCuG-GUGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 135621 0.66 0.454306
Target:  5'- ---cGGcCGcGGCGCCCGcACCACCcGGa -3'
miRNA:   3'- accaCC-GC-CCGCGGGCcUGGUGGcCC- -5'
29400 3' -66.3 NC_006151.1 + 139654 0.66 0.454306
Target:  5'- gGGUcgcGGCGGGCGCgCCgcccgacaGGcCCugCGGc -3'
miRNA:   3'- aCCA---CCGCCCGCG-GG--------CCuGGugGCCc -5'
29400 3' -66.3 NC_006151.1 + 8647 0.66 0.454306
Target:  5'- cGGUGGUGcggguguuacuGGCGauaCCGGuACCgacgguggugGCCGGGc -3'
miRNA:   3'- aCCACCGC-----------CCGCg--GGCC-UGG----------UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 37852 0.66 0.454306
Target:  5'- aUGGccuacccgGGCc-GCGCCgCGGACCcccgcGCCGGGg -3'
miRNA:   3'- -ACCa-------CCGccCGCGG-GCCUGG-----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 83105 0.66 0.454306
Target:  5'- ---cGaGCGGGCGCCCGcGCCGgucgcagagcUCGGGc -3'
miRNA:   3'- accaC-CGCCCGCGGGCcUGGU----------GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 89663 0.66 0.445813
Target:  5'- aGGUGGCGcGUGCUCGGGCgCACa--- -3'
miRNA:   3'- aCCACCGCcCGCGGGCCUG-GUGgccc -5'
29400 3' -66.3 NC_006151.1 + 8740 0.66 0.445813
Target:  5'- aGGaGGgGGGUGCCCGGGCgugucuCGCCu-- -3'
miRNA:   3'- aCCaCCgCCCGCGGGCCUG------GUGGccc -5'
29400 3' -66.3 NC_006151.1 + 15036 0.66 0.445813
Target:  5'- aGGUGcGCGuccacGGCGCgCgGGGCC-CCGGc -3'
miRNA:   3'- aCCAC-CGC-----CCGCG-GgCCUGGuGGCCc -5'
29400 3' -66.3 NC_006151.1 + 28233 0.66 0.445813
Target:  5'- aGGgGGcCGGGCcgaCGGGCCcauugGCCGGGg -3'
miRNA:   3'- aCCaCC-GCCCGcggGCCUGG-----UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 77931 0.66 0.445813
Target:  5'- gUGGUgaagGGCGGGCGCgCGGcCC-CCa-- -3'
miRNA:   3'- -ACCA----CCGCCCGCGgGCCuGGuGGccc -5'
29400 3' -66.3 NC_006151.1 + 91540 0.66 0.445813
Target:  5'- gGcGUGcGCGaGGUGCgCGG-CCAgCGGGg -3'
miRNA:   3'- aC-CAC-CGC-CCGCGgGCCuGGUgGCCC- -5'
29400 3' -66.3 NC_006151.1 + 98459 0.66 0.445813
Target:  5'- cGGccUGGCGcuguGGCGCCUGcGCCacgACUGGGa -3'
miRNA:   3'- aCC--ACCGC----CCGCGGGCcUGG---UGGCCC- -5'
29400 3' -66.3 NC_006151.1 + 4606 0.66 0.445813
Target:  5'- -cGUGGCcgugGGGCGCgUGGACCcggcGCUGGc -3'
miRNA:   3'- acCACCG----CCCGCGgGCCUGG----UGGCCc -5'
29400 3' -66.3 NC_006151.1 + 56335 0.66 0.437409
Target:  5'- cGGUGGCuGGaGCGCgCGcGcgccCCGCCGGc -3'
miRNA:   3'- aCCACCG-CC-CGCGgGC-Cu---GGUGGCCc -5'
29400 3' -66.3 NC_006151.1 + 118880 0.66 0.437409
Target:  5'- cGGcGGCGcGGCGgCgaCGcGGCCGCCGGcGg -3'
miRNA:   3'- aCCaCCGC-CCGCgG--GC-CUGGUGGCC-C- -5'
29400 3' -66.3 NC_006151.1 + 76812 0.66 0.437409
Target:  5'- cGGcgagGGCGGGCGCguaguggCGGcCCGcguCCGGGc -3'
miRNA:   3'- aCCa---CCGCCCGCGg------GCCuGGU---GGCCC- -5'
29400 3' -66.3 NC_006151.1 + 66546 0.66 0.437409
Target:  5'- cGGgGGCGcGcGCGgCCGcGCCGCCGuGGa -3'
miRNA:   3'- aCCaCCGC-C-CGCgGGCcUGGUGGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.