Results 41 - 60 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29400 | 3' | -66.3 | NC_006151.1 | + | 104901 | 0.66 | 0.489119 |
Target: 5'- gUGGUGGaCGcGGCggcgGCgCGcGACCGCgaCGGGg -3' miRNA: 3'- -ACCACC-GC-CCG----CGgGC-CUGGUG--GCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 137740 | 0.66 | 0.489119 |
Target: 5'- cGGUGGCcGGCGCCgacaCGGuCCG-CGGc -3' miRNA: 3'- aCCACCGcCCGCGG----GCCuGGUgGCCc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 2702 | 0.66 | 0.489119 |
Target: 5'- gGGUgcaGGCGGGCGaa-GGAggccuCCACgCGGGc -3' miRNA: 3'- aCCA---CCGCCCGCgggCCU-----GGUG-GCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 14641 | 0.66 | 0.489119 |
Target: 5'- cGG-GGCGGccGgGCUCGGGuCCGguuCCGGGu -3' miRNA: 3'- aCCaCCGCC--CgCGGGCCU-GGU---GGCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 17574 | 0.66 | 0.489119 |
Target: 5'- ---aGGCGGggauGCGCCCGGACCcguCCa-- -3' miRNA: 3'- accaCCGCC----CGCGGGCCUGGu--GGccc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 106364 | 0.66 | 0.480295 |
Target: 5'- cUGGacGCGGGCGCgCGc-CCGCCGcGGc -3' miRNA: 3'- -ACCacCGCCCGCGgGCcuGGUGGC-CC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 64212 | 0.66 | 0.480295 |
Target: 5'- aGGUccGGCguGGGCGCCUcggcguacaGGGCCGCgacggcggcgCGGGc -3' miRNA: 3'- aCCA--CCG--CCCGCGGG---------CCUGGUG----------GCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 134829 | 0.66 | 0.462885 |
Target: 5'- cGGUGGCGaccGCGCgCGcACaCACgCGGGg -3' miRNA: 3'- aCCACCGCc--CGCGgGCcUG-GUG-GCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 39952 | 0.66 | 0.471549 |
Target: 5'- cUGGUGcugacccCGGGCGCCgucGCCGCCGcGGg -3' miRNA: 3'- -ACCACc------GCCCGCGGgccUGGUGGC-CC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 60394 | 0.66 | 0.471549 |
Target: 5'- cGGUGGUguagacgaGGGCGCgCaCGGcCCAgCGGc -3' miRNA: 3'- aCCACCG--------CCCGCG-G-GCCuGGUgGCCc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 96734 | 0.66 | 0.471549 |
Target: 5'- aGGcGGCGGGCGCgacgaCGGagGCCAUgGcGGc -3' miRNA: 3'- aCCaCCGCCCGCGg----GCC--UGGUGgC-CC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 7027 | 0.66 | 0.471549 |
Target: 5'- cGGcGGCcaucucGGCucGCCCGGGCCAauGGGc -3' miRNA: 3'- aCCaCCGc-----CCG--CGGGCCUGGUggCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 106505 | 0.66 | 0.471549 |
Target: 5'- cGGcUGGCGcGCGCcgugCCGGGCgCGCUGGc -3' miRNA: 3'- aCC-ACCGCcCGCG----GGCCUG-GUGGCCc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 18684 | 0.66 | 0.471549 |
Target: 5'- gGGUuccaCGGGCGCgCGGGCggCGCCGGc -3' miRNA: 3'- aCCAcc--GCCCGCGgGCCUG--GUGGCCc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 19303 | 0.66 | 0.471549 |
Target: 5'- cGGc-GCGGGCGgCCGGucgcCCACCGc- -3' miRNA: 3'- aCCacCGCCCGCgGGCCu---GGUGGCcc -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 63788 | 0.66 | 0.475038 |
Target: 5'- ---aGGCGGggucggccgucgccaGCGCcucgCCGGGCC-CCGGGg -3' miRNA: 3'- accaCCGCC---------------CGCG----GGCCUGGuGGCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 17830 | 0.66 | 0.477663 |
Target: 5'- cGG-GGCGGGCGgCCaccACCcgcucgcuacacguGCCGGGc -3' miRNA: 3'- aCCaCCGCCCGCgGGcc-UGG--------------UGGCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 58845 | 0.66 | 0.479417 |
Target: 5'- aGGUGcgccagcGCGuGGagcuCGCCCGG-CgCGCCGGGu -3' miRNA: 3'- aCCAC-------CGC-CC----GCGGGCCuG-GUGGCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 134982 | 0.66 | 0.479417 |
Target: 5'- cGGgccuucucgGGCGGGCGCgucuuggCgGGGgCGCgGGGg -3' miRNA: 3'- aCCa--------CCGCCCGCG-------GgCCUgGUGgCCC- -5' |
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29400 | 3' | -66.3 | NC_006151.1 | + | 8578 | 0.66 | 0.480295 |
Target: 5'- gGGUgGGUGGGUGUgagggCCGGugCGaguaUGGGg -3' miRNA: 3'- aCCA-CCGCCCGCG-----GGCCugGUg---GCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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