miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 135881 0.66 0.700076
Target:  5'- gUCCGCGUGCGgcccguguuCGUCGcCGCcGCgaccCCGGc -3'
miRNA:   3'- -GGGUGCACGU---------GCGGC-GCGaCGa---GGCC- -5'
29401 3' -61.1 NC_006151.1 + 53983 0.66 0.690433
Target:  5'- cUCCGCGgGCGuCGCgGCGa-GCUcCCGGa -3'
miRNA:   3'- -GGGUGCaCGU-GCGgCGCgaCGA-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 62009 0.66 0.690433
Target:  5'- gUgACGUGCGCGCCGCcCUGgCggCCa- -3'
miRNA:   3'- gGgUGCACGUGCGGCGcGAC-Ga-GGcc -5'
29401 3' -61.1 NC_006151.1 + 63911 0.66 0.690433
Target:  5'- gCgCGCGUacgcGCGCGCCGUGggGCUCgCGu -3'
miRNA:   3'- -GgGUGCA----CGUGCGGCGCgaCGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 86311 0.66 0.690433
Target:  5'- gCCCGCagcugggggccGUGCuCGcCCGCGCcguggGC-CCGGa -3'
miRNA:   3'- -GGGUG-----------CACGuGC-GGCGCGa----CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 129276 0.66 0.690433
Target:  5'- uUCCACGaaGCGCGgCGCGUUcCUCgGGc -3'
miRNA:   3'- -GGGUGCa-CGUGCgGCGCGAcGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 37462 0.66 0.690433
Target:  5'- gCCGCG-GCcCGCuacCGCGCcGCggCCGGg -3'
miRNA:   3'- gGGUGCaCGuGCG---GCGCGaCGa-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 37959 0.66 0.690433
Target:  5'- cCCCGCGaGCugGCgGaCGCcUGCgUCCuGGc -3'
miRNA:   3'- -GGGUGCaCGugCGgC-GCG-ACG-AGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 51227 0.66 0.689466
Target:  5'- gCCCGCGcagGCggcgcgaGCGCUcgGCGCaGCUCCaGGu -3'
miRNA:   3'- -GGGUGCa--CG-------UGCGG--CGCGaCGAGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 39624 0.66 0.680745
Target:  5'- -aCACGgugaGCAC-CCGCGCcggGCcCCGGa -3'
miRNA:   3'- ggGUGCa---CGUGcGGCGCGa--CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 72388 0.66 0.680745
Target:  5'- gUCGCGUGC-CGCCGCaGC-GuCUCCa- -3'
miRNA:   3'- gGGUGCACGuGCGGCG-CGaC-GAGGcc -5'
29401 3' -61.1 NC_006151.1 + 106500 0.66 0.680745
Target:  5'- gCCAgCG-GCugGCgCGCGCcGUgCCGGg -3'
miRNA:   3'- gGGU-GCaCGugCG-GCGCGaCGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 130196 0.66 0.680745
Target:  5'- uCCUcgGgGUGCcCGCugaggaCGCGCaGCUCCGGc -3'
miRNA:   3'- -GGG--UgCACGuGCG------GCGCGaCGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 53348 0.66 0.680745
Target:  5'- -gCGCGcGCGCGCCGCGUacUGCgUCGu -3'
miRNA:   3'- ggGUGCaCGUGCGGCGCG--ACGaGGCc -5'
29401 3' -61.1 NC_006151.1 + 64310 0.66 0.680745
Target:  5'- gCCGCa-GCGCGCCGUGCUGg-CCu- -3'
miRNA:   3'- gGGUGcaCGUGCGGCGCGACgaGGcc -5'
29401 3' -61.1 NC_006151.1 + 74781 0.66 0.680745
Target:  5'- gCCGCGcgaGCGCGCagaagguGCGCUcGCUCCcguGGa -3'
miRNA:   3'- gGGUGCa--CGUGCGg------CGCGA-CGAGG---CC- -5'
29401 3' -61.1 NC_006151.1 + 119804 0.66 0.680745
Target:  5'- aCCACGccgGCuuccggcacGCGCUGCGC-GCUCUGc -3'
miRNA:   3'- gGGUGCa--CG---------UGCGGCGCGaCGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 92046 0.66 0.680745
Target:  5'- gCCCGC-UGCcUGCUGCGCcUGCUgCGc -3'
miRNA:   3'- -GGGUGcACGuGCGGCGCG-ACGAgGCc -5'
29401 3' -61.1 NC_006151.1 + 99111 0.66 0.680745
Target:  5'- aCCAgG-GCGUGCUgGCGCUGCUggaccCCGGg -3'
miRNA:   3'- gGGUgCaCGUGCGG-CGCGACGA-----GGCC- -5'
29401 3' -61.1 NC_006151.1 + 58136 0.67 0.67102
Target:  5'- gCCCGCGccGUACGCgGcCGCgUGCcaCCGGc -3'
miRNA:   3'- -GGGUGCa-CGUGCGgC-GCG-ACGa-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.