miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 138764 0.66 0.719198
Target:  5'- aCCUgugggACGUGCACuuucgccuggcgGCCGuCGCgugGCUCCu- -3'
miRNA:   3'- -GGG-----UGCACGUG------------CGGC-GCGa--CGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 120000 0.66 0.709667
Target:  5'- gCgCACGcUGCugGCgGUGCUGCaggacCUGGc -3'
miRNA:   3'- -GgGUGC-ACGugCGgCGCGACGa----GGCC- -5'
29401 3' -61.1 NC_006151.1 + 21013 0.66 0.709667
Target:  5'- gCgACGUGCACGCUGaCGCcgGCgCCc- -3'
miRNA:   3'- gGgUGCACGUGCGGC-GCGa-CGaGGcc -5'
29401 3' -61.1 NC_006151.1 + 11021 0.66 0.709667
Target:  5'- gCCCGCucGCuCGCCGgGCcgGCcggCCGGg -3'
miRNA:   3'- -GGGUGcaCGuGCGGCgCGa-CGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 46112 0.66 0.709667
Target:  5'- gCCACGaGgAgGCCGaaggGCaggGCUCCGGg -3'
miRNA:   3'- gGGUGCaCgUgCGGCg---CGa--CGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 86657 0.66 0.709667
Target:  5'- --gGCGcuCACGCgCGCGCUGCUCuCGa -3'
miRNA:   3'- gggUGCacGUGCG-GCGCGACGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 112211 0.66 0.709667
Target:  5'- uCCC-CGUGgGCGCaguCGCGCUcGCUCg-- -3'
miRNA:   3'- -GGGuGCACgUGCG---GCGCGA-CGAGgcc -5'
29401 3' -61.1 NC_006151.1 + 125555 0.66 0.709667
Target:  5'- gCgGCGUGUACGUgcagaacuccaUGCGCgUGC-CCGGc -3'
miRNA:   3'- gGgUGCACGUGCG-----------GCGCG-ACGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 49579 0.66 0.709667
Target:  5'- gCCCGCGcucgccgGCGCcccgGCCaGCGC-GCUgCCGGu -3'
miRNA:   3'- -GGGUGCa------CGUG----CGG-CGCGaCGA-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 106380 0.66 0.709667
Target:  5'- gCCCGCc-GCgGCGCC-CGCUGCgcgaCGGg -3'
miRNA:   3'- -GGGUGcaCG-UGCGGcGCGACGag--GCC- -5'
29401 3' -61.1 NC_006151.1 + 65382 0.66 0.708711
Target:  5'- aCCACGUGCcccgggcGCGCCGUgaGCgaGCggCGGu -3'
miRNA:   3'- gGGUGCACG-------UGCGGCG--CGa-CGagGCC- -5'
29401 3' -61.1 NC_006151.1 + 383 0.66 0.700076
Target:  5'- cCCCggACGUG-ACGCCGgGCUcCUCCc- -3'
miRNA:   3'- -GGG--UGCACgUGCGGCgCGAcGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 39194 0.66 0.700076
Target:  5'- gCCCACcgccucUGCACGCCGgacucgcaCGCcUGggCCGGg -3'
miRNA:   3'- -GGGUGc-----ACGUGCGGC--------GCG-ACgaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 84612 0.66 0.700076
Target:  5'- -aCGCGcGC-CGCCGCGCgGCcgCCGcGg -3'
miRNA:   3'- ggGUGCaCGuGCGGCGCGaCGa-GGC-C- -5'
29401 3' -61.1 NC_006151.1 + 105287 0.66 0.700076
Target:  5'- -gCGCGcGCGCgGCCGCGCcgGCgccUCCGa -3'
miRNA:   3'- ggGUGCaCGUG-CGGCGCGa-CG---AGGCc -5'
29401 3' -61.1 NC_006151.1 + 119391 0.66 0.700076
Target:  5'- gCCCGCaGcUGCugGCGCgCGUGCUGUUCUa- -3'
miRNA:   3'- -GGGUG-C-ACG--UGCG-GCGCGACGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 18537 0.66 0.700076
Target:  5'- gCCCGCGUcgGCACccggaacgGCCGCGaggccGC-CCGGc -3'
miRNA:   3'- -GGGUGCA--CGUG--------CGGCGCga---CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 94708 0.66 0.700076
Target:  5'- aCCAC-UGCGCgcgcuccaGCCGCGCcacgGCgucCCGGc -3'
miRNA:   3'- gGGUGcACGUG--------CGGCGCGa---CGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 135881 0.66 0.700076
Target:  5'- gUCCGCGUGCGgcccguguuCGUCGcCGCcGCgaccCCGGc -3'
miRNA:   3'- -GGGUGCACGU---------GCGGC-GCGaCGa---GGCC- -5'
29401 3' -61.1 NC_006151.1 + 54334 0.66 0.700076
Target:  5'- gCUCACGcGCACGCucaacgcggCGCGCUacgaggacgugGC-CCGGg -3'
miRNA:   3'- -GGGUGCaCGUGCG---------GCGCGA-----------CGaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.