miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 15285 0.68 0.612322
Target:  5'- cCCCGCugcgcaGCGCGCUGCGCgaGCUCa-- -3'
miRNA:   3'- -GGGUGca----CGUGCGGCGCGa-CGAGgcc -5'
29401 3' -61.1 NC_006151.1 + 17101 0.69 0.535016
Target:  5'- gCCCGuCG-GgGCGCCGgGg-GCUCCGGc -3'
miRNA:   3'- -GGGU-GCaCgUGCGGCgCgaCGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 17488 0.7 0.470338
Target:  5'- gUCgGCG-GCGCGCCGCuGCUGCaCCa- -3'
miRNA:   3'- -GGgUGCaCGUGCGGCG-CGACGaGGcc -5'
29401 3' -61.1 NC_006151.1 + 18537 0.66 0.700076
Target:  5'- gCCCGCGUcgGCACccggaacgGCCGCGaggccGC-CCGGc -3'
miRNA:   3'- -GGGUGCA--CGUG--------CGGCGCga---CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 18687 0.67 0.62211
Target:  5'- uUCCACGgGCGCGCgG-GCgGCgCCGGc -3'
miRNA:   3'- -GGGUGCaCGUGCGgCgCGaCGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 18725 0.67 0.631906
Target:  5'- gUCCACGUagauCGCGUCGuCGCcGCcgCCGGg -3'
miRNA:   3'- -GGGUGCAc---GUGCGGC-GCGaCGa-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 19014 0.74 0.291382
Target:  5'- gCCGCGcGCGCGCCGgcgaggugaaGCUGCacgCCGGg -3'
miRNA:   3'- gGGUGCaCGUGCGGCg---------CGACGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 20765 0.69 0.516176
Target:  5'- aCCGCGgcggacGCGCGCCGgGCgagcgGCUCgCGc -3'
miRNA:   3'- gGGUGCa-----CGUGCGGCgCGa----CGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 21013 0.66 0.709667
Target:  5'- gCgACGUGCACGCUGaCGCcgGCgCCc- -3'
miRNA:   3'- gGgUGCACGUGCGGC-GCGa-CGaGGcc -5'
29401 3' -61.1 NC_006151.1 + 22303 0.69 0.554093
Target:  5'- gUCCACGUcCGCGCCGaGC-GUcgUCCGGg -3'
miRNA:   3'- -GGGUGCAcGUGCGGCgCGaCG--AGGCC- -5'
29401 3' -61.1 NC_006151.1 + 26969 0.72 0.393514
Target:  5'- gCUCGCGcaGCGCGCUGCGCagcggggcgcucUGCUCgGGc -3'
miRNA:   3'- -GGGUGCa-CGUGCGGCGCG------------ACGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 27176 0.7 0.452588
Target:  5'- gCCGCGUGUcggggcgccaggGgGCCGCGCagaagGCgCCGGg -3'
miRNA:   3'- gGGUGCACG------------UgCGGCGCGa----CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 30620 0.68 0.573366
Target:  5'- gUCgGCGUGCGCGCUGUGCggGUgggUgGGg -3'
miRNA:   3'- -GGgUGCACGUGCGGCGCGa-CGa--GgCC- -5'
29401 3' -61.1 NC_006151.1 + 31209 0.67 0.631906
Target:  5'- gCCCGCGUcCAgGCCGgGCccccgGCcggCCGGc -3'
miRNA:   3'- -GGGUGCAcGUgCGGCgCGa----CGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 31761 0.67 0.651492
Target:  5'- gCCUGCGgcggcgggcGCGCGCCGgGCgGCUCUc- -3'
miRNA:   3'- -GGGUGCa--------CGUGCGGCgCGaCGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 32244 0.66 0.728661
Target:  5'- gCCGCG-GCGacCGCCGcCGCcGCUCuCGa -3'
miRNA:   3'- gGGUGCaCGU--GCGGC-GCGaCGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 33298 0.7 0.479346
Target:  5'- cCCCGgG-GCGCGCgCGCGUgGgaCCGGg -3'
miRNA:   3'- -GGGUgCaCGUGCG-GCGCGaCgaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 36013 0.68 0.560818
Target:  5'- cCCCgACGgcgGCagccagggcucccgGCGCCGCgGCUcCUCCGGc -3'
miRNA:   3'- -GGG-UGCa--CG--------------UGCGGCG-CGAcGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 37020 0.67 0.641702
Target:  5'- cCCCGCc-GC-CGCCGCGCggcGCUCgGc -3'
miRNA:   3'- -GGGUGcaCGuGCGGCGCGa--CGAGgCc -5'
29401 3' -61.1 NC_006151.1 + 37462 0.66 0.690433
Target:  5'- gCCGCG-GCcCGCuacCGCGCcGCggCCGGg -3'
miRNA:   3'- gGGUGCaCGuGCG---GCGCGaCGa-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.