miRNA display CGI


Results 1 - 20 of 295 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 383 0.66 0.700076
Target:  5'- cCCCggACGUG-ACGCCGgGCUcCUCCc- -3'
miRNA:   3'- -GGG--UGCACgUGCGGCgCGAcGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 2471 0.7 0.452588
Target:  5'- cCCCAgCG-GUugGCCGCGCggUGC-CCGa -3'
miRNA:   3'- -GGGU-GCaCGugCGGCGCG--ACGaGGCc -5'
29401 3' -61.1 NC_006151.1 + 2749 0.71 0.432635
Target:  5'- gCCCACGaUggagcuagaguccaGCACgGCCGCGCggaGCUCgCGGc -3'
miRNA:   3'- -GGGUGC-A--------------CGUG-CGGCGCGa--CGAG-GCC- -5'
29401 3' -61.1 NC_006151.1 + 3267 0.68 0.573366
Target:  5'- gCCGCG-GCGCGCgGCGaugUGCgccagggcggCCGGg -3'
miRNA:   3'- gGGUGCaCGUGCGgCGCg--ACGa---------GGCC- -5'
29401 3' -61.1 NC_006151.1 + 3691 0.69 0.516176
Target:  5'- gCCC-CGgGCGCGCgGCGCUucuucuugcgccGCUCgGGc -3'
miRNA:   3'- -GGGuGCaCGUGCGgCGCGA------------CGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 3824 0.68 0.612322
Target:  5'- aCUugGUGCugGCgGgGCUggaggGC-CCGGa -3'
miRNA:   3'- gGGugCACGugCGgCgCGA-----CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 3886 0.69 0.525564
Target:  5'- gCCgGCGccgGCGCugggacgacgagGCCGgGCUGCUCgGGc -3'
miRNA:   3'- -GGgUGCa--CGUG------------CGGCgCGACGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 3926 0.69 0.525564
Target:  5'- gCCagaGCGgggGCAgGCCGgGCgcggGCUCCGcGg -3'
miRNA:   3'- -GGg--UGCa--CGUgCGGCgCGa---CGAGGC-C- -5'
29401 3' -61.1 NC_006151.1 + 4312 0.68 0.602546
Target:  5'- gCUCGCGggGCACgcgGCCGgGCUGCg-CGGc -3'
miRNA:   3'- -GGGUGCa-CGUG---CGGCgCGACGagGCC- -5'
29401 3' -61.1 NC_006151.1 + 5004 0.72 0.385491
Target:  5'- uCCUGCGcGgGgGCCGgGCggGCUCCGGg -3'
miRNA:   3'- -GGGUGCaCgUgCGGCgCGa-CGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 5711 0.71 0.435209
Target:  5'- aCCGC-UGCugGCUGUGCUGguggcgCCGGg -3'
miRNA:   3'- gGGUGcACGugCGGCGCGACga----GGCC- -5'
29401 3' -61.1 NC_006151.1 + 7647 0.7 0.488437
Target:  5'- aCCCGCGccuCGCGCUcgGCGCgcGCUCCGa -3'
miRNA:   3'- -GGGUGCac-GUGCGG--CGCGa-CGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 8250 0.66 0.728661
Target:  5'- gCCGgGccgGCGCGCCGggaCGCccCUCCGGg -3'
miRNA:   3'- gGGUgCa--CGUGCGGC---GCGacGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 8293 0.7 0.461418
Target:  5'- cCCCGCGcGgGCGCCGCGUcccGCcCCGa -3'
miRNA:   3'- -GGGUGCaCgUGCGGCGCGa--CGaGGCc -5'
29401 3' -61.1 NC_006151.1 + 9038 0.75 0.237407
Target:  5'- gCCCGCcgggGCGCcCCGCG-UGCUCCGGg -3'
miRNA:   3'- -GGGUGca--CGUGcGGCGCgACGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 10626 0.72 0.377577
Target:  5'- gCCCGCGUGCGCucguGCCgGCGCgGCaUCCc- -3'
miRNA:   3'- -GGGUGCACGUG----CGG-CGCGaCG-AGGcc -5'
29401 3' -61.1 NC_006151.1 + 11021 0.66 0.709667
Target:  5'- gCCCGCucGCuCGCCGgGCcgGCcggCCGGg -3'
miRNA:   3'- -GGGUGcaCGuGCGGCgCGa-CGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 11354 0.74 0.278608
Target:  5'- gCCCGCGgGCGCuaCCGCGC-GCUCCGc -3'
miRNA:   3'- -GGGUGCaCGUGc-GGCGCGaCGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 14823 0.7 0.452588
Target:  5'- aCCGCGU-C-CGCCGCGCccaUGgaCCGGg -3'
miRNA:   3'- gGGUGCAcGuGCGGCGCG---ACgaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 15018 0.67 0.619173
Target:  5'- cCCCGCccgaccccgaggagGUGCGCGUccacggCGCGCgggGCcCCGGc -3'
miRNA:   3'- -GGGUG--------------CACGUGCG------GCGCGa--CGaGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.