miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 142327 0.72 0.385491
Target:  5'- gCCCGCGcGCuCGCgGCGCccGCUuuGGa -3'
miRNA:   3'- -GGGUGCaCGuGCGgCGCGa-CGAggCC- -5'
29401 3' -61.1 NC_006151.1 + 141839 0.68 0.598641
Target:  5'- uCCCGCGcucgacgcgagggGCucGCGCCGCGCc-CUCUGGu -3'
miRNA:   3'- -GGGUGCa------------CG--UGCGGCGCGacGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 141693 0.72 0.347031
Target:  5'- uCCCACGgcgGCugGCggcggaCGCGgUGC-CCGGg -3'
miRNA:   3'- -GGGUGCa--CGugCG------GCGCgACGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 139249 0.68 0.612322
Target:  5'- uCCgGCGcgacgGcCACGcCCGCGC-GCUCCGa -3'
miRNA:   3'- -GGgUGCa----C-GUGC-GGCGCGaCGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 139088 0.7 0.488437
Target:  5'- gCCugGggGCGCGCaugGCGCUGUUCaCGa -3'
miRNA:   3'- gGGugCa-CGUGCGg--CGCGACGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 138978 0.66 0.719198
Target:  5'- gCUCGCGa-CGCGCCGCGCcGCgcucagCCGc -3'
miRNA:   3'- -GGGUGCacGUGCGGCGCGaCGa-----GGCc -5'
29401 3' -61.1 NC_006151.1 + 138764 0.66 0.719198
Target:  5'- aCCUgugggACGUGCACuuucgccuggcgGCCGuCGCgugGCUCCu- -3'
miRNA:   3'- -GGG-----UGCACGUG------------CGGC-GCGa--CGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 138709 0.72 0.393514
Target:  5'- cCCgGCGcUGCGCGCCGCGC-GCgggUCGu -3'
miRNA:   3'- -GGgUGC-ACGUGCGGCGCGaCGa--GGCc -5'
29401 3' -61.1 NC_006151.1 + 138592 0.79 0.133275
Target:  5'- cCCCGuCGUGUACGCgGCGCUGCcgCuCGGc -3'
miRNA:   3'- -GGGU-GCACGUGCGgCGCGACGa-G-GCC- -5'
29401 3' -61.1 NC_006151.1 + 138328 0.67 0.651492
Target:  5'- gCCUGCGggcccgGCACG-CGCGCaGCccgCCGGc -3'
miRNA:   3'- -GGGUGCa-----CGUGCgGCGCGaCGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 137760 0.68 0.570464
Target:  5'- gUCCGCGgccugGCGCgcgugcuccagcagGCCGUGCUGCUggagCGGg -3'
miRNA:   3'- -GGGUGCa----CGUG--------------CGGCGCGACGAg---GCC- -5'
29401 3' -61.1 NC_006151.1 + 137675 0.69 0.535016
Target:  5'- gCCCGcCGUGCGgcUGCCGCGCcaagauggGCUuCCGc -3'
miRNA:   3'- -GGGU-GCACGU--GCGGCGCGa-------CGA-GGCc -5'
29401 3' -61.1 NC_006151.1 + 137315 0.71 0.443851
Target:  5'- gCCGCGcggUGCucgacGCGCuCGCGCUGCUCUu- -3'
miRNA:   3'- gGGUGC---ACG-----UGCG-GCGCGACGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 137277 0.71 0.401645
Target:  5'- gCCCGCGgGCACGCUcgaggcggccauGCGCggGUUCCGc -3'
miRNA:   3'- -GGGUGCaCGUGCGG------------CGCGa-CGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 136897 0.66 0.728661
Target:  5'- cCCCACGgcugggUGCGCGCCcccgacgaggaGCaGCaGCagCCGGg -3'
miRNA:   3'- -GGGUGC------ACGUGCGG-----------CG-CGaCGa-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 136812 0.73 0.332434
Target:  5'- gCUCGCGgccGaCGCGCCGCGCggGCUCUGc -3'
miRNA:   3'- -GGGUGCa--C-GUGCGGCGCGa-CGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 136732 0.66 0.700076
Target:  5'- gCCCagaACGUGacgccgaGCGUCGCGCgccucGCcCCGGc -3'
miRNA:   3'- -GGG---UGCACg------UGCGGCGCGa----CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 136462 0.71 0.415709
Target:  5'- -gCGCGUGCGCGCCGacCGCgccgagaugggcgucCUCCGGg -3'
miRNA:   3'- ggGUGCACGUGCGGC--GCGac-------------GAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 136426 0.74 0.266285
Target:  5'- cCCCGCGgcggcGCACGCCGCGC-GCUaCGu -3'
miRNA:   3'- -GGGUGCa----CGUGCGGCGCGaCGAgGCc -5'
29401 3' -61.1 NC_006151.1 + 135881 0.66 0.700076
Target:  5'- gUCCGCGUGCGgcccguguuCGUCGcCGCcGCgaccCCGGc -3'
miRNA:   3'- -GGGUGCACGU---------GCGGC-GCGaCGa---GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.