miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 117638 1.12 0.000714
Target:  5'- gCCCACGUGCACGCCGCGCUGCUCCGGg -3'
miRNA:   3'- -GGGUGCACGUGCGGCGCGACGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 60792 0.82 0.089178
Target:  5'- aCCACGUGCAcgcugggcuCGCCGCGCaGCUCCa- -3'
miRNA:   3'- gGGUGCACGU---------GCGGCGCGaCGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 114431 0.81 0.093821
Target:  5'- aCCGCGUGCugGaCCGC-CUGCUCgGGg -3'
miRNA:   3'- gGGUGCACGugC-GGCGcGACGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 87181 0.8 0.123703
Target:  5'- gCCCGCG-GCGcCGCCGCaGCUGCUgccgcCCGGg -3'
miRNA:   3'- -GGGUGCaCGU-GCGGCG-CGACGA-----GGCC- -5'
29401 3' -61.1 NC_006151.1 + 58683 0.8 0.126821
Target:  5'- aCCGCGccgUGCGCGCCGCGCcacaGCgCCGGg -3'
miRNA:   3'- gGGUGC---ACGUGCGGCGCGa---CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 114126 0.79 0.133275
Target:  5'- cCCCACGUGCGcCGCCGCcgagccGCgGCUCgGGc -3'
miRNA:   3'- -GGGUGCACGU-GCGGCG------CGaCGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 138592 0.79 0.133275
Target:  5'- cCCCGuCGUGUACGCgGCGCUGCcgCuCGGc -3'
miRNA:   3'- -GGGU-GCACGUGCGgCGCGACGa-G-GCC- -5'
29401 3' -61.1 NC_006151.1 + 74414 0.79 0.138998
Target:  5'- aCCCACaggaugugcugaaaGUGCGCGCCguugacGCGCaGCUCCGGc -3'
miRNA:   3'- -GGGUG--------------CACGUGCGG------CGCGaCGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 123350 0.79 0.147099
Target:  5'- aCCC-CGUGgACGCCGCGCUcCUuCCGGc -3'
miRNA:   3'- -GGGuGCACgUGCGGCGCGAcGA-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 121879 0.78 0.154491
Target:  5'- gCUCACGUGCGCGCUGCGCcuggcGCUCgCGu -3'
miRNA:   3'- -GGGUGCACGUGCGGCGCGa----CGAG-GCc -5'
29401 3' -61.1 NC_006151.1 + 84904 0.77 0.18752
Target:  5'- gCCAUgGUGUACGCCGCGCgcgGCgccgccUCCGGc -3'
miRNA:   3'- gGGUG-CACGUGCGGCGCGa--CG------AGGCC- -5'
29401 3' -61.1 NC_006151.1 + 49998 0.77 0.19858
Target:  5'- gUCCGCGUuuGCGCGCCGCGCgcgcggcccgcgcgGCgcccCCGGg -3'
miRNA:   3'- -GGGUGCA--CGUGCGGCGCGa-------------CGa---GGCC- -5'
29401 3' -61.1 NC_006151.1 + 50086 0.76 0.201432
Target:  5'- gCCCACGcgGCGCGCguaCGCGaucaGCUCCGGu -3'
miRNA:   3'- -GGGUGCa-CGUGCG---GCGCga--CGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 81191 0.76 0.206266
Target:  5'- gCCgaGCGUGUACGCCGgGCcGCagUCCGGg -3'
miRNA:   3'- gGG--UGCACGUGCGGCgCGaCG--AGGCC- -5'
29401 3' -61.1 NC_006151.1 + 52002 0.76 0.211199
Target:  5'- gCCgGCGUGCagcuuGCGCCGCGCcaGCUCCu- -3'
miRNA:   3'- -GGgUGCACG-----UGCGGCGCGa-CGAGGcc -5'
29401 3' -61.1 NC_006151.1 + 100631 0.76 0.226611
Target:  5'- aCCugGUcaGCGCCGCGCUGCgCCGc -3'
miRNA:   3'- gGGugCAcgUGCGGCGCGACGaGGCc -5'
29401 3' -61.1 NC_006151.1 + 130316 0.75 0.237407
Target:  5'- --aGCGcGCGCGCCGCGC-GCUCgGGg -3'
miRNA:   3'- gggUGCaCGUGCGGCGCGaCGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 9038 0.75 0.237407
Target:  5'- gCCCGCcgggGCGCcCCGCG-UGCUCCGGg -3'
miRNA:   3'- -GGGUGca--CGUGcGGCGCgACGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 134293 0.75 0.242404
Target:  5'- gCCCACGggcgcaauuuuauUGCACGCCGCuGCgccucGCgCCGGg -3'
miRNA:   3'- -GGGUGC-------------ACGUGCGGCG-CGa----CGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 104408 0.75 0.26029
Target:  5'- gCgGCGUGCugGcCCGCGCcGCcgCCGGc -3'
miRNA:   3'- gGgUGCACGugC-GGCGCGaCGa-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.