miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 3' -61.1 NC_006151.1 + 136426 0.74 0.266285
Target:  5'- cCCCGCGgcggcGCACGCCGCGC-GCUaCGu -3'
miRNA:   3'- -GGGUGCa----CGUGCGGCGCGaCGAgGCc -5'
29401 3' -61.1 NC_006151.1 + 37915 0.74 0.27239
Target:  5'- gCCCGCGUcccgccgccuucGC-CGCCGCGCaGC-CCGGc -3'
miRNA:   3'- -GGGUGCA------------CGuGCGGCGCGaCGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 91273 0.74 0.278608
Target:  5'- gCCCGCGUccgcaaaguacGCGCGCCGCGUcagcaGCcgcgCCGGg -3'
miRNA:   3'- -GGGUGCA-----------CGUGCGGCGCGa----CGa---GGCC- -5'
29401 3' -61.1 NC_006151.1 + 11354 0.74 0.278608
Target:  5'- gCCCGCGgGCGCuaCCGCGC-GCUCCGc -3'
miRNA:   3'- -GGGUGCaCGUGc-GGCGCGaCGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 85757 0.74 0.278608
Target:  5'- uCCC-CGgGCugGCCGCGCUGgCgCUGGa -3'
miRNA:   3'- -GGGuGCaCGugCGGCGCGAC-GaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 66525 0.74 0.284939
Target:  5'- gCUCGC--GCGCGCCGCGCU-CUUCGGg -3'
miRNA:   3'- -GGGUGcaCGUGCGGCGCGAcGAGGCC- -5'
29401 3' -61.1 NC_006151.1 + 61300 0.74 0.291382
Target:  5'- cUCgACGgGCGCGUCGCGCUGCaggUCCaGGg -3'
miRNA:   3'- -GGgUGCaCGUGCGGCGCGACG---AGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 19014 0.74 0.291382
Target:  5'- gCCGCGcGCGCGCCGgcgaggugaaGCUGCacgCCGGg -3'
miRNA:   3'- gGGUGCaCGUGCGGCg---------CGACGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 79261 0.73 0.318294
Target:  5'- cCCgGCGcgGUcucgACGCCGCGCgGCgUCCGGa -3'
miRNA:   3'- -GGgUGCa-CG----UGCGGCGCGaCG-AGGCC- -5'
29401 3' -61.1 NC_006151.1 + 118827 0.73 0.318294
Target:  5'- aCCACGagaGCGCCGUGCUGCccgCCGa -3'
miRNA:   3'- gGGUGCacgUGCGGCGCGACGa--GGCc -5'
29401 3' -61.1 NC_006151.1 + 83463 0.73 0.318294
Target:  5'- gCCCACGaagGC-CGCCGCGCUGaugUCCc- -3'
miRNA:   3'- -GGGUGCa--CGuGCGGCGCGACg--AGGcc -5'
29401 3' -61.1 NC_006151.1 + 57739 0.73 0.318294
Target:  5'- gCCCGCacgGCGCGCCGCaGCcGCUcguggcCCGGg -3'
miRNA:   3'- -GGGUGca-CGUGCGGCG-CGaCGA------GGCC- -5'
29401 3' -61.1 NC_006151.1 + 87310 0.73 0.325307
Target:  5'- gCCCGUGgcGCACGCCGUGCcggcGCUcCCGGg -3'
miRNA:   3'- -GGGUGCa-CGUGCGGCGCGa---CGA-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 136812 0.73 0.332434
Target:  5'- gCUCGCGgccGaCGCGCCGCGCggGCUCUGc -3'
miRNA:   3'- -GGGUGCa--C-GUGCGGCGCGa-CGAGGCc -5'
29401 3' -61.1 NC_006151.1 + 53508 0.73 0.338218
Target:  5'- gCCAgGUGCucCGCCGCGCgccccgugagccGCUCCaGGg -3'
miRNA:   3'- gGGUgCACGu-GCGGCGCGa-----------CGAGG-CC- -5'
29401 3' -61.1 NC_006151.1 + 102968 0.73 0.339676
Target:  5'- gCCCACGacgGCGCGCUgcugGCGCaGCUgCUGGa -3'
miRNA:   3'- -GGGUGCa--CGUGCGG----CGCGaCGA-GGCC- -5'
29401 3' -61.1 NC_006151.1 + 104563 0.73 0.339676
Target:  5'- gCCCugGgcgcgcgGCGCGCggaCGUGCUGCaggCCGGc -3'
miRNA:   3'- -GGGugCa------CGUGCG---GCGCGACGa--GGCC- -5'
29401 3' -61.1 NC_006151.1 + 39725 0.72 0.347031
Target:  5'- gCCCGCcaGCGCuCCGCGCUcggGCUCgGGg -3'
miRNA:   3'- -GGGUGcaCGUGcGGCGCGA---CGAGgCC- -5'
29401 3' -61.1 NC_006151.1 + 141693 0.72 0.347031
Target:  5'- uCCCACGgcgGCugGCggcggaCGCGgUGC-CCGGg -3'
miRNA:   3'- -GGGUGCa--CGugCG------GCGCgACGaGGCC- -5'
29401 3' -61.1 NC_006151.1 + 118047 0.72 0.347031
Target:  5'- aCCGugacCGUGCGCGCCGCGCcGCU--GGg -3'
miRNA:   3'- gGGU----GCACGUGCGGCGCGaCGAggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.