miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 2358 0.68 0.918973
Target:  5'- gCGCCGCGGCGCaGAaGGcGCgc-AACUCg -3'
miRNA:   3'- -GUGGCGCCGCG-CUaCU-UGaacUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 31558 0.68 0.918973
Target:  5'- gCGCCGCGGUGCGc-GAACgUGA--UCa -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaACUugAG- -5'
29401 5' -53.1 NC_006151.1 + 54642 0.68 0.918973
Target:  5'- aGCgGCGGCGCGAgc-GCUgcgUGGACg- -3'
miRNA:   3'- gUGgCGCCGCGCUacuUGA---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 140455 0.68 0.918973
Target:  5'- uGCCuCGGCGgGAucaUGGACgcgcUGGACUCc -3'
miRNA:   3'- gUGGcGCCGCgCU---ACUUGa---ACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 6291 0.68 0.924663
Target:  5'- gGCCGCGGCGgCGGccgccagGAGCUggcUGAAgUUg -3'
miRNA:   3'- gUGGCGCCGC-GCUa------CUUGA---ACUUgAG- -5'
29401 5' -53.1 NC_006151.1 + 91111 0.67 0.929569
Target:  5'- gGCCGCGGCGCccuucgccacggcGgcGAGCUUGGcCa- -3'
miRNA:   3'- gUGGCGCCGCG-------------CuaCUUGAACUuGag -5'
29401 5' -53.1 NC_006151.1 + 106653 0.67 0.929569
Target:  5'- aCGCCGCGGCGCacGUGcGCgaGGccgcggcGCUCg -3'
miRNA:   3'- -GUGGCGCCGCGc-UACuUGaaCU-------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 3265 0.67 0.930102
Target:  5'- gCGCCGCGGCGCGcgGcgauguGCgccaGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCu-----UGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 38182 0.67 0.930102
Target:  5'- gCACCGUGGCGCcgcuGGUGcGCUacagcgUGGACg- -3'
miRNA:   3'- -GUGGCGCCGCG----CUACuUGA------ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 109553 0.67 0.930102
Target:  5'- gCGCCGUGGaCGUGGcccGAGCcgagGGACUCu -3'
miRNA:   3'- -GUGGCGCC-GCGCUa--CUUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 29602 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGG-GGGCU-GGugUg -3'
miRNA:   3'- gUGGCGCCGC-GCUaCUUGAaCUugAg -5'
29401 5' -53.1 NC_006151.1 + 41490 0.67 0.935288
Target:  5'- gACCGCguGGCGCGAgggGAGCcaaugGGGCg- -3'
miRNA:   3'- gUGGCG--CCGCGCUa--CUUGaa---CUUGag -5'
29401 5' -53.1 NC_006151.1 + 106794 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGGUGcuCgucgGGGCc- -3'
miRNA:   3'- gUGGCGCCGC-GCUACuuGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 27443 0.67 0.940223
Target:  5'- gCGCgGCGGaCGCGGUGggUcggGGGCg- -3'
miRNA:   3'- -GUGgCGCC-GCGCUACuuGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 95974 0.67 0.940223
Target:  5'- cCGCCGCGGCGCagcaGGAUggGGGC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGcua-CUUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 55176 0.67 0.940223
Target:  5'- gACCGgGGCGCGcauccUGGACagcgUGGACa- -3'
miRNA:   3'- gUGGCgCCGCGCu----ACUUGa---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 20763 0.67 0.944908
Target:  5'- cCACCGCGGCggacgcGCGccGGGCgagcGGCUCg -3'
miRNA:   3'- -GUGGCGCCG------CGCuaCUUGaac-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 77618 0.67 0.944908
Target:  5'- -uCUGCGGcCGCGcgGAGCU-GGACg- -3'
miRNA:   3'- guGGCGCC-GCGCuaCUUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 130852 0.67 0.944908
Target:  5'- uCGCCgucgGCGGCGCGGgcgGGACcgcagUGGGCg- -3'
miRNA:   3'- -GUGG----CGCCGCGCUa--CUUGa----ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 112605 0.67 0.944908
Target:  5'- cCGCCGCGGCGcCGcUGGcGCU-GGACg- -3'
miRNA:   3'- -GUGGCGCCGC-GCuACU-UGAaCUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.