miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 9492 0.7 0.840455
Target:  5'- gGCCGCGGCGUGGgaGAGCg-GGGCg- -3'
miRNA:   3'- gUGGCGCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 29970 0.7 0.840455
Target:  5'- gACCGCGGCGaUGGUGAA--UGGGCcCg -3'
miRNA:   3'- gUGGCGCCGC-GCUACUUgaACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 106917 0.7 0.848718
Target:  5'- gCACCGCGGCGUGuccacGGACcucAGCUCc -3'
miRNA:   3'- -GUGGCGCCGCGCua---CUUGaacUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 119453 0.7 0.856774
Target:  5'- gGCCGCGGCGaCG-UGGACgccgUGcGCUa -3'
miRNA:   3'- gUGGCGCCGC-GCuACUUGa---ACuUGAg -5'
29401 5' -53.1 NC_006151.1 + 92531 0.69 0.864616
Target:  5'- gCACCG-GGCGCc--GGACgUGGACUCg -3'
miRNA:   3'- -GUGGCgCCGCGcuaCUUGaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 55083 0.69 0.864616
Target:  5'- gGCCGCGGCGCGccucGUGcGCcucaucgUGAACa- -3'
miRNA:   3'- gUGGCGCCGCGC----UACuUGa------ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 72923 0.69 0.871485
Target:  5'- gACCGCcucggcgGGCGUGAaGAACUUGAAg-- -3'
miRNA:   3'- gUGGCG-------CCGCGCUaCUUGAACUUgag -5'
29401 5' -53.1 NC_006151.1 + 103078 0.69 0.872237
Target:  5'- gCACCuggaGCGGCGCGAgcUGGACac--GCUCa -3'
miRNA:   3'- -GUGG----CGCCGCGCU--ACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 76572 0.69 0.879631
Target:  5'- aGCgCGCGGUGCGAgugcaccucGAugUUGGACa- -3'
miRNA:   3'- gUG-GCGCCGCGCUa--------CUugAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 84379 0.69 0.886793
Target:  5'- gAUCGCGGCGCGcggGGACgggcgggGAGCg- -3'
miRNA:   3'- gUGGCGCCGCGCua-CUUGaa-----CUUGag -5'
29401 5' -53.1 NC_006151.1 + 32779 0.69 0.886793
Target:  5'- aCGCCGCGGcCGCGggGGGCcgaagcGGACg- -3'
miRNA:   3'- -GUGGCGCC-GCGCuaCUUGaa----CUUGag -5'
29401 5' -53.1 NC_006151.1 + 129701 0.69 0.886793
Target:  5'- gACCGCGGCGCcGAgcagGcAgUUGAGCa- -3'
miRNA:   3'- gUGGCGCCGCG-CUa---CuUgAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 137174 0.69 0.886793
Target:  5'- aGCCgGCGGCGCaGAUGuACgUGAGC-Cg -3'
miRNA:   3'- gUGG-CGCCGCG-CUACuUGaACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 96081 0.69 0.893718
Target:  5'- gCGCgCGCGGCcgGCGAaGAGCaUGAGCg- -3'
miRNA:   3'- -GUG-GCGCCG--CGCUaCUUGaACUUGag -5'
29401 5' -53.1 NC_006151.1 + 97361 0.69 0.893718
Target:  5'- gGCCGCGGCGgCGgcGGGCgcggcggGGGCgUCg -3'
miRNA:   3'- gUGGCGCCGC-GCuaCUUGaa-----CUUG-AG- -5'
29401 5' -53.1 NC_006151.1 + 40088 0.68 0.900402
Target:  5'- gCGCCGgGGCcggccccgGCGA-GGACggGGACUCu -3'
miRNA:   3'- -GUGGCgCCG--------CGCUaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 133495 0.68 0.900402
Target:  5'- uCACCuugGCGGCGCGggGGGCgcgggagGAGC-Cg -3'
miRNA:   3'- -GUGG---CGCCGCGCuaCUUGaa-----CUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 133879 0.68 0.906841
Target:  5'- uCACgGCGGCgGCcGUGGGCUgauccaccgGGACUCc -3'
miRNA:   3'- -GUGgCGCCG-CGcUACUUGAa--------CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 91740 0.68 0.906841
Target:  5'- aCAUCGCGGCG-GgcGAGC--GGGCUCg -3'
miRNA:   3'- -GUGGCGCCGCgCuaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 4793 0.68 0.913032
Target:  5'- gGCCGCGGCGCGGU-AGC--GGGC-Cg -3'
miRNA:   3'- gUGGCGCCGCGCUAcUUGaaCUUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.