miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 117674 1.1 0.004058
Target:  5'- gCACCGCGGCGCGAUGAACUUGAACUCg -3'
miRNA:   3'- -GUGGCGCCGCGCUACUUGAACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 90851 0.79 0.38086
Target:  5'- uGCCGCGGCGuCGugaaaaaguUGAACgUGAGCUCg -3'
miRNA:   3'- gUGGCGCCGC-GCu--------ACUUGaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 53940 0.77 0.462032
Target:  5'- cCGCCGCGGCGag--GGACUUGAAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCgcuaCUUGAACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 121406 0.77 0.491058
Target:  5'- gGCCuGCGGCGCGGgcggGGACgucgcgGGGCUCg -3'
miRNA:   3'- gUGG-CGCCGCGCUa---CUUGaa----CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 82876 0.73 0.687188
Target:  5'- gGCCGCGGCGCgGGUGGGag-GGGCg- -3'
miRNA:   3'- gUGGCGCCGCG-CUACUUgaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 54875 0.73 0.687188
Target:  5'- cCGCUGUGGCGCGAcgcGAGCUgcucuuuGACUCg -3'
miRNA:   3'- -GUGGCGCCGCGCUa--CUUGAac-----UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 141642 0.73 0.707846
Target:  5'- cCGCgGCGGCGCGGcgGGGCcccgcGGGCUCg -3'
miRNA:   3'- -GUGgCGCCGCGCUa-CUUGaa---CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 78665 0.72 0.718078
Target:  5'- gGCCGgGGCGCGGgugcUGGAC--GGGCUCu -3'
miRNA:   3'- gUGGCgCCGCGCU----ACUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 89728 0.72 0.718078
Target:  5'- gGCCGCGGcCGCGGUGGuggGCgagacGAGCUg -3'
miRNA:   3'- gUGGCGCC-GCGCUACU---UGaa---CUUGAg -5'
29401 5' -53.1 NC_006151.1 + 120111 0.72 0.738301
Target:  5'- gCGCCGCcGCGUGGUGGACau--GCUCa -3'
miRNA:   3'- -GUGGCGcCGCGCUACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 141285 0.72 0.738301
Target:  5'- gGCUGCGGUcCGAUGAcggUGGGCUCg -3'
miRNA:   3'- gUGGCGCCGcGCUACUugaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 133421 0.72 0.748271
Target:  5'- gGCCGCGGaCGCGggGGuCUUGGcggccgaggcGCUCu -3'
miRNA:   3'- gUGGCGCC-GCGCuaCUuGAACU----------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 68041 0.72 0.748271
Target:  5'- -cCCGcCGGCGCGgcGGGCacGGGCUCg -3'
miRNA:   3'- guGGC-GCCGCGCuaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 116409 0.72 0.758134
Target:  5'- gGCCaCGGCGU--UGAGCUUGuAGCUCg -3'
miRNA:   3'- gUGGcGCCGCGcuACUUGAAC-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 134586 0.72 0.758134
Target:  5'- aACCGCGGCGCGcacccgGUGAcCcUGGAgUCg -3'
miRNA:   3'- gUGGCGCCGCGC------UACUuGaACUUgAG- -5'
29401 5' -53.1 NC_006151.1 + 3112 0.71 0.767879
Target:  5'- cCGCCGCGGCGCGGgucccaggccGGGCgcgGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCUa---------CUUGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 86625 0.71 0.796311
Target:  5'- gACCGCGaGCGCGuguggcacAUGAGCgagGAggcGCUCa -3'
miRNA:   3'- gUGGCGC-CGCGC--------UACUUGaa-CU---UGAG- -5'
29401 5' -53.1 NC_006151.1 + 112442 0.7 0.814501
Target:  5'- cCGCCGCcGCGCGccAUGGGCUgGAGCg- -3'
miRNA:   3'- -GUGGCGcCGCGC--UACUUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 6141 0.7 0.831992
Target:  5'- gGCCGCGGcCGCGA-GGACggcGGcCUCg -3'
miRNA:   3'- gUGGCGCC-GCGCUaCUUGaa-CUuGAG- -5'
29401 5' -53.1 NC_006151.1 + 112057 0.7 0.840455
Target:  5'- gGCgGCGGCgGUGGUGGugggGCUggugGAGCUCc -3'
miRNA:   3'- gUGgCGCCG-CGCUACU----UGAa---CUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.