miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 2358 0.68 0.918973
Target:  5'- gCGCCGCGGCGCaGAaGGcGCgc-AACUCg -3'
miRNA:   3'- -GUGGCGCCGCG-CUaCU-UGaacUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 3112 0.71 0.767879
Target:  5'- cCGCCGCGGCGCGGgucccaggccGGGCgcgGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCUa---------CUUGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 3265 0.67 0.930102
Target:  5'- gCGCCGCGGCGCGcgGcgauguGCgccaGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCu-----UGaa--CUUGag -5'
29401 5' -53.1 NC_006151.1 + 3448 0.66 0.967956
Target:  5'- cCGCCGUcgGGCGCGggGuGCUcGGGCa- -3'
miRNA:   3'- -GUGGCG--CCGCGCuaCuUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 4220 0.67 0.95354
Target:  5'- gGCCGgGGCGCGGgcGGGCgcGGGCa- -3'
miRNA:   3'- gUGGCgCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 4793 0.68 0.913032
Target:  5'- gGCCGCGGCGCGGU-AGC--GGGC-Cg -3'
miRNA:   3'- gUGGCGCCGCGCUAcUUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 5545 0.66 0.967956
Target:  5'- cCGCCucGCGGCgGCGGgcucgucGAGCagGGGCUCg -3'
miRNA:   3'- -GUGG--CGCCG-CGCUa------CUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 6141 0.7 0.831992
Target:  5'- gGCCGCGGcCGCGA-GGACggcGGcCUCg -3'
miRNA:   3'- gUGGCGCC-GCGCUaCUUGaa-CUuGAG- -5'
29401 5' -53.1 NC_006151.1 + 6230 0.67 0.95354
Target:  5'- aGCCGCGGCGCcggGAGCccuGGCUg -3'
miRNA:   3'- gUGGCGCCGCGcuaCUUGaacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 6291 0.68 0.924663
Target:  5'- gGCCGCGGCGgCGGccgccagGAGCUggcUGAAgUUg -3'
miRNA:   3'- gUGGCGCCGC-GCUa------CUUGA---ACUUgAG- -5'
29401 5' -53.1 NC_006151.1 + 7122 0.67 0.944908
Target:  5'- gGCCGCGGCGCGccaAUGAGaUUGucCg- -3'
miRNA:   3'- gUGGCGCCGCGC---UACUUgAACuuGag -5'
29401 5' -53.1 NC_006151.1 + 9492 0.7 0.840455
Target:  5'- gGCCGCGGCGUGGgaGAGCg-GGGCg- -3'
miRNA:   3'- gUGGCGCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 19423 0.66 0.96121
Target:  5'- cCACCGCuccggGGUGaCGAUGGGCg---GCUCg -3'
miRNA:   3'- -GUGGCG-----CCGC-GCUACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 19640 0.67 0.949346
Target:  5'- uCGCCGCGcGCGUcgagGGUGAAgUUGGcgccCUCg -3'
miRNA:   3'- -GUGGCGC-CGCG----CUACUUgAACUu---GAG- -5'
29401 5' -53.1 NC_006151.1 + 20763 0.67 0.944908
Target:  5'- cCACCGCGGCggacgcGCGccGGGCgagcGGCUCg -3'
miRNA:   3'- -GUGGCGCCG------CGCuaCUUGaac-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 27443 0.67 0.940223
Target:  5'- gCGCgGCGGaCGCGGUGggUcggGGGCg- -3'
miRNA:   3'- -GUGgCGCC-GCGCUACuuGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 29602 0.67 0.935288
Target:  5'- gGCCGCGGCGgCGG-GGGCU-GGugUg -3'
miRNA:   3'- gUGGCGCCGC-GCUaCUUGAaCUugAg -5'
29401 5' -53.1 NC_006151.1 + 29970 0.7 0.840455
Target:  5'- gACCGCGGCGaUGGUGAA--UGGGCcCg -3'
miRNA:   3'- gUGGCGCCGC-GCUACUUgaACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 31558 0.68 0.918973
Target:  5'- gCGCCGCGGUGCGc-GAACgUGA--UCa -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaACUugAG- -5'
29401 5' -53.1 NC_006151.1 + 32779 0.69 0.886793
Target:  5'- aCGCCGCGGcCGCGggGGGCcgaagcGGACg- -3'
miRNA:   3'- -GUGGCGCC-GCGCuaCUUGaa----CUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.