miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 141642 0.73 0.707846
Target:  5'- cCGCgGCGGCGCGGcgGGGCcccgcGGGCUCg -3'
miRNA:   3'- -GUGgCGCCGCGCUa-CUUGaa---CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 141285 0.72 0.738301
Target:  5'- gGCUGCGGUcCGAUGAcggUGGGCUCg -3'
miRNA:   3'- gUGGCGCCGcGCUACUugaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 140455 0.68 0.918973
Target:  5'- uGCCuCGGCGgGAucaUGGACgcgcUGGACUCc -3'
miRNA:   3'- gUGGcGCCGCgCU---ACUUGa---ACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 138627 0.66 0.967956
Target:  5'- aCGCCGCcgggGGCGCGccGGACUggGAGgccUUCa -3'
miRNA:   3'- -GUGGCG----CCGCGCuaCUUGAa-CUU---GAG- -5'
29401 5' -53.1 NC_006151.1 + 137174 0.69 0.886793
Target:  5'- aGCCgGCGGCGCaGAUGuACgUGAGC-Cg -3'
miRNA:   3'- gUGG-CGCCGCG-CUACuUGaACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 135119 0.66 0.970996
Target:  5'- aGCgCGCGGgGCGGgcUGGGCggGGACg- -3'
miRNA:   3'- gUG-GCGCCgCGCU--ACUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 134586 0.72 0.758134
Target:  5'- aACCGCGGCGCGcacccgGUGAcCcUGGAgUCg -3'
miRNA:   3'- gUGGCGCCGCGC------UACUuGaACUUgAG- -5'
29401 5' -53.1 NC_006151.1 + 133879 0.68 0.906841
Target:  5'- uCACgGCGGCgGCcGUGGGCUgauccaccgGGACUCc -3'
miRNA:   3'- -GUGgCGCCG-CGcUACUUGAa--------CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 133495 0.68 0.900402
Target:  5'- uCACCuugGCGGCGCGggGGGCgcgggagGAGC-Cg -3'
miRNA:   3'- -GUGG---CGCCGCGCuaCUUGaa-----CUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 133421 0.72 0.748271
Target:  5'- gGCCGCGGaCGCGggGGuCUUGGcggccgaggcGCUCu -3'
miRNA:   3'- gUGGCGCC-GCGCuaCUuGAACU----------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 130852 0.67 0.944908
Target:  5'- uCGCCgucgGCGGCGCGGgcgGGACcgcagUGGGCg- -3'
miRNA:   3'- -GUGG----CGCCGCGCUa--CUUGa----ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 129701 0.69 0.886793
Target:  5'- gACCGCGGCGCcGAgcagGcAgUUGAGCa- -3'
miRNA:   3'- gUGGCGCCGCG-CUa---CuUgAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 129499 0.66 0.967956
Target:  5'- gCAgCGCgGGCGCGAUGAcgagccGCUUGccgccGACg- -3'
miRNA:   3'- -GUgGCG-CCGCGCUACU------UGAAC-----UUGag -5'
29401 5' -53.1 NC_006151.1 + 128830 0.66 0.964358
Target:  5'- --aCGCGGCGCucUGGgccuuguGCUUGAACg- -3'
miRNA:   3'- gugGCGCCGCGcuACU-------UGAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 123263 0.66 0.967956
Target:  5'- cCGCCGCGcGCGCGGgcaccgucgUGGAC--GAGCg- -3'
miRNA:   3'- -GUGGCGC-CGCGCU---------ACUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 122671 0.66 0.960849
Target:  5'- gCGCCGCGccgagguGCGCGcgGcGGCcgugGAGCUCg -3'
miRNA:   3'- -GUGGCGC-------CGCGCuaC-UUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 122217 0.66 0.96121
Target:  5'- aGCCGU-GCGCGGUGuGCUUcgagGAGCUg -3'
miRNA:   3'- gUGGCGcCGCGCUACuUGAA----CUUGAg -5'
29401 5' -53.1 NC_006151.1 + 121406 0.77 0.491058
Target:  5'- gGCCuGCGGCGCGGgcggGGACgucgcgGGGCUCg -3'
miRNA:   3'- gUGG-CGCCGCGCUa---CUUGaa----CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 120111 0.72 0.738301
Target:  5'- gCGCCGCcGCGUGGUGGACau--GCUCa -3'
miRNA:   3'- -GUGGCGcCGCGCUACUUGaacuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 119453 0.7 0.856774
Target:  5'- gGCCGCGGCGaCG-UGGACgccgUGcGCUa -3'
miRNA:   3'- gUGGCGCCGC-GCuACUUGa---ACuUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.