miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 37404 0.67 0.95354
Target:  5'- cUACgGCGGCGCcggGGACUcccgcgagGGGCUCu -3'
miRNA:   3'- -GUGgCGCCGCGcuaCUUGAa-------CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 38182 0.67 0.930102
Target:  5'- gCACCGUGGCGCcgcuGGUGcGCUacagcgUGGACg- -3'
miRNA:   3'- -GUGGCGCCGCG----CUACuUGA------ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 40088 0.68 0.900402
Target:  5'- gCGCCGgGGCcggccccgGCGA-GGACggGGACUCu -3'
miRNA:   3'- -GUGGCgCCG--------CGCUaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 41490 0.67 0.935288
Target:  5'- gACCGCguGGCGCGAgggGAGCcaaugGGGCg- -3'
miRNA:   3'- gUGGCG--CCGCGCUa--CUUGaa---CUUGag -5'
29401 5' -53.1 NC_006151.1 + 47638 0.66 0.957493
Target:  5'- gGCgGCGGCGCGcgGuACUgcAACUg -3'
miRNA:   3'- gUGgCGCCGCGCuaCuUGAacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 50477 0.67 0.95354
Target:  5'- cCAgCGCGGCGCGAccGAGCc-GGACc- -3'
miRNA:   3'- -GUgGCGCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 53940 0.77 0.462032
Target:  5'- cCGCCGCGGCGag--GGACUUGAAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCgcuaCUUGAACUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 54642 0.68 0.918973
Target:  5'- aGCgGCGGCGCGAgc-GCUgcgUGGACg- -3'
miRNA:   3'- gUGgCGCCGCGCUacuUGA---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 54875 0.73 0.687188
Target:  5'- cCGCUGUGGCGCGAcgcGAGCUgcucuuuGACUCg -3'
miRNA:   3'- -GUGGCGCCGCGCUa--CUUGAac-----UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 55083 0.69 0.864616
Target:  5'- gGCCGCGGCGCGccucGUGcGCcucaucgUGAACa- -3'
miRNA:   3'- gUGGCGCCGCGC----UACuUGa------ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 55176 0.67 0.940223
Target:  5'- gACCGgGGCGCGcauccUGGACagcgUGGACa- -3'
miRNA:   3'- gUGGCgCCGCGCu----ACUUGa---ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 64531 0.66 0.966027
Target:  5'- cCGCCGCGGcCGCGucggGGGCggcGAggccguggcgcgccaGCUCg -3'
miRNA:   3'- -GUGGCGCC-GCGCua--CUUGaa-CU---------------UGAG- -5'
29401 5' -53.1 NC_006151.1 + 68041 0.72 0.748271
Target:  5'- -cCCGcCGGCGCGgcGGGCacGGGCUCg -3'
miRNA:   3'- guGGC-GCCGCGCuaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 72923 0.69 0.871485
Target:  5'- gACCGCcucggcgGGCGUGAaGAACUUGAAg-- -3'
miRNA:   3'- gUGGCG-------CCGCGCUaCUUGAACUUgag -5'
29401 5' -53.1 NC_006151.1 + 73040 0.67 0.95354
Target:  5'- gGCgGUGGCGCGGUGGGggUGcGCg- -3'
miRNA:   3'- gUGgCGCCGCGCUACUUgaACuUGag -5'
29401 5' -53.1 NC_006151.1 + 76572 0.69 0.879631
Target:  5'- aGCgCGCGGUGCGAgugcaccucGAugUUGGACa- -3'
miRNA:   3'- gUG-GCGCCGCGCUa--------CUugAACUUGag -5'
29401 5' -53.1 NC_006151.1 + 77618 0.67 0.944908
Target:  5'- -uCUGCGGcCGCGcgGAGCU-GGACg- -3'
miRNA:   3'- guGGCGCC-GCGCuaCUUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 78665 0.72 0.718078
Target:  5'- gGCCGgGGCGCGGgugcUGGAC--GGGCUCu -3'
miRNA:   3'- gUGGCgCCGCGCU----ACUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 81566 0.66 0.970996
Target:  5'- gGCCGUGGUGCG--GAGCagGGuCUCg -3'
miRNA:   3'- gUGGCGCCGCGCuaCUUGaaCUuGAG- -5'
29401 5' -53.1 NC_006151.1 + 82616 0.66 0.96121
Target:  5'- cCGCgCGCGGgcgcCGCGGUGGGCgcgGGACc- -3'
miRNA:   3'- -GUG-GCGCC----GCGCUACUUGaa-CUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.