miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 82616 0.66 0.96121
Target:  5'- cCGCgCGCGGgcgcCGCGGUGGGCgcgGGACc- -3'
miRNA:   3'- -GUG-GCGCC----GCGCUACUUGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 122671 0.66 0.960849
Target:  5'- gCGCCGCGccgagguGCGCGcgGcGGCcgugGAGCUCg -3'
miRNA:   3'- -GUGGCGC-------CGCGCuaC-UUGaa--CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 47638 0.66 0.957493
Target:  5'- gGCgGCGGCGCGcgGuACUgcAACUg -3'
miRNA:   3'- gUGgCGCCGCGCuaCuUGAacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 99084 0.66 0.957493
Target:  5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 4220 0.67 0.95354
Target:  5'- gGCCGgGGCGCGGgcGGGCgcGGGCa- -3'
miRNA:   3'- gUGGCgCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 37404 0.67 0.95354
Target:  5'- cUACgGCGGCGCcggGGACUcccgcgagGGGCUCu -3'
miRNA:   3'- -GUGgCGCCGCGcuaCUUGAa-------CUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 73040 0.67 0.95354
Target:  5'- gGCgGUGGCGCGGUGGGggUGcGCg- -3'
miRNA:   3'- gUGgCGCCGCGCUACUUgaACuUGag -5'
29401 5' -53.1 NC_006151.1 + 104721 0.67 0.95354
Target:  5'- gCugCGCGGCGCcGUGAccuaccuggagcGCUUcGACUUu -3'
miRNA:   3'- -GugGCGCCGCGcUACU------------UGAAcUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 105526 0.67 0.95354
Target:  5'- gCAUgGCGGCGCGcAUcGGGCccGAGCUg -3'
miRNA:   3'- -GUGgCGCCGCGC-UA-CUUGaaCUUGAg -5'
29401 5' -53.1 NC_006151.1 + 6230 0.67 0.95354
Target:  5'- aGCCGCGGCGCcggGAGCccuGGCUg -3'
miRNA:   3'- gUGGCGCCGCGcuaCUUGaacUUGAg -5'
29401 5' -53.1 NC_006151.1 + 50477 0.67 0.95354
Target:  5'- cCAgCGCGGCGCGAccGAGCc-GGACc- -3'
miRNA:   3'- -GUgGCGCCGCGCUa-CUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 19640 0.67 0.949346
Target:  5'- uCGCCGCGcGCGUcgagGGUGAAgUUGGcgccCUCg -3'
miRNA:   3'- -GUGGCGC-CGCG----CUACUUgAACUu---GAG- -5'
29401 5' -53.1 NC_006151.1 + 7122 0.67 0.944908
Target:  5'- gGCCGCGGCGCGccaAUGAGaUUGucCg- -3'
miRNA:   3'- gUGGCGCCGCGC---UACUUgAACuuGag -5'
29401 5' -53.1 NC_006151.1 + 20763 0.67 0.944908
Target:  5'- cCACCGCGGCggacgcGCGccGGGCgagcGGCUCg -3'
miRNA:   3'- -GUGGCGCCG------CGCuaCUUGaac-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 77618 0.67 0.944908
Target:  5'- -uCUGCGGcCGCGcgGAGCU-GGACg- -3'
miRNA:   3'- guGGCGCC-GCGCuaCUUGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 130852 0.67 0.944908
Target:  5'- uCGCCgucgGCGGCGCGGgcgGGACcgcagUGGGCg- -3'
miRNA:   3'- -GUGG----CGCCGCGCUa--CUUGa----ACUUGag -5'
29401 5' -53.1 NC_006151.1 + 112605 0.67 0.944908
Target:  5'- cCGCCGCGGCGcCGcUGGcGCU-GGACg- -3'
miRNA:   3'- -GUGGCGCCGC-GCuACU-UGAaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 95974 0.67 0.940223
Target:  5'- cCGCCGCGGCGCagcaGGAUggGGGC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGcua-CUUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 27443 0.67 0.940223
Target:  5'- gCGCgGCGGaCGCGGUGggUcggGGGCg- -3'
miRNA:   3'- -GUGgCGCC-GCGCUACuuGaa-CUUGag -5'
29401 5' -53.1 NC_006151.1 + 55176 0.67 0.940223
Target:  5'- gACCGgGGCGCGcauccUGGACagcgUGGACa- -3'
miRNA:   3'- gUGGCgCCGCGCu----ACUUGa---ACUUGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.