miRNA display CGI


Results 41 - 60 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29401 5' -53.1 NC_006151.1 + 82876 0.73 0.687188
Target:  5'- gGCCGCGGCGCgGGUGGGag-GGGCg- -3'
miRNA:   3'- gUGGCGCCGCG-CUACUUgaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 84379 0.69 0.886793
Target:  5'- gAUCGCGGCGCGcggGGACgggcgggGAGCg- -3'
miRNA:   3'- gUGGCGCCGCGCua-CUUGaa-----CUUGag -5'
29401 5' -53.1 NC_006151.1 + 86625 0.71 0.796311
Target:  5'- gACCGCGaGCGCGuguggcacAUGAGCgagGAggcGCUCa -3'
miRNA:   3'- gUGGCGC-CGCGC--------UACUUGaa-CU---UGAG- -5'
29401 5' -53.1 NC_006151.1 + 89728 0.72 0.718078
Target:  5'- gGCCGCGGcCGCGGUGGuggGCgagacGAGCUg -3'
miRNA:   3'- gUGGCGCC-GCGCUACU---UGaa---CUUGAg -5'
29401 5' -53.1 NC_006151.1 + 90436 0.66 0.964696
Target:  5'- aCGCCcauCaGCGUGAUGcAGCgggUGGACUCg -3'
miRNA:   3'- -GUGGc--GcCGCGCUAC-UUGa--ACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 90851 0.79 0.38086
Target:  5'- uGCCGCGGCGuCGugaaaaaguUGAACgUGAGCUCg -3'
miRNA:   3'- gUGGCGCCGC-GCu--------ACUUGaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 91111 0.67 0.929569
Target:  5'- gGCCGCGGCGCccuucgccacggcGgcGAGCUUGGcCa- -3'
miRNA:   3'- gUGGCGCCGCG-------------CuaCUUGAACUuGag -5'
29401 5' -53.1 NC_006151.1 + 91146 0.66 0.970996
Target:  5'- nCACCugGgGGCGCGA-GAGCgucaGGCUCa -3'
miRNA:   3'- -GUGG--CgCCGCGCUaCUUGaac-UUGAG- -5'
29401 5' -53.1 NC_006151.1 + 91740 0.68 0.906841
Target:  5'- aCAUCGCGGCG-GgcGAGC--GGGCUCg -3'
miRNA:   3'- -GUGGCGCCGCgCuaCUUGaaCUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 92208 0.66 0.970996
Target:  5'- cCGCCGCGGcCGCGcugGAGCacGAuGCUg -3'
miRNA:   3'- -GUGGCGCC-GCGCua-CUUGaaCU-UGAg -5'
29401 5' -53.1 NC_006151.1 + 92531 0.69 0.864616
Target:  5'- gCACCG-GGCGCc--GGACgUGGACUCg -3'
miRNA:   3'- -GUGGCgCCGCGcuaCUUGaACUUGAG- -5'
29401 5' -53.1 NC_006151.1 + 95974 0.67 0.940223
Target:  5'- cCGCCGCGGCGCagcaGGAUggGGGC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGcua-CUUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 96081 0.69 0.893718
Target:  5'- gCGCgCGCGGCcgGCGAaGAGCaUGAGCg- -3'
miRNA:   3'- -GUG-GCGCCG--CGCUaCUUGaACUUGag -5'
29401 5' -53.1 NC_006151.1 + 97361 0.69 0.893718
Target:  5'- gGCCGCGGCGgCGgcGGGCgcggcggGGGCgUCg -3'
miRNA:   3'- gUGGCGCCGC-GCuaCUUGaa-----CUUG-AG- -5'
29401 5' -53.1 NC_006151.1 + 97743 0.66 0.967956
Target:  5'- aGCgCGCGGUGCGG-GAACacgUG-GCUCc -3'
miRNA:   3'- gUG-GCGCCGCGCUaCUUGa--ACuUGAG- -5'
29401 5' -53.1 NC_006151.1 + 99084 0.66 0.957493
Target:  5'- gCACCGUGGCGCGGcgccUGcGCacGGAC-Ca -3'
miRNA:   3'- -GUGGCGCCGCGCU----ACuUGaaCUUGaG- -5'
29401 5' -53.1 NC_006151.1 + 100434 0.66 0.96121
Target:  5'- gCugCGCGGCGUGAUGGcgcagACgacgGAggcGCUg -3'
miRNA:   3'- -GugGCGCCGCGCUACU-----UGaa--CU---UGAg -5'
29401 5' -53.1 NC_006151.1 + 100898 0.66 0.966027
Target:  5'- gCGCCGCGGCGCGcgcgcgcccgacgacGcGAGCgcGGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGC---------------UaCUUGaaCUUGag -5'
29401 5' -53.1 NC_006151.1 + 102505 0.66 0.967956
Target:  5'- aCGCCGCGGCGCG--GGACcccGGCg- -3'
miRNA:   3'- -GUGGCGCCGCGCuaCUUGaacUUGag -5'
29401 5' -53.1 NC_006151.1 + 103078 0.69 0.872237
Target:  5'- gCACCuggaGCGGCGCGAgcUGGACac--GCUCa -3'
miRNA:   3'- -GUGG----CGCCGCGCU--ACUUGaacuUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.