miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 5' -51.5 NC_006151.1 + 3541 0.71 0.86685
Target:  5'- gGAGCGGGguccGGAGCGGGCcCGAG-UCc -3'
miRNA:   3'- -CUCGCUCa---UCUCGCUUGuGCUCuAGa -5'
29402 5' -51.5 NC_006151.1 + 4342 0.67 0.9778
Target:  5'- cGGCGaAGgcGGcGCGGACGCGGGcgCa -3'
miRNA:   3'- cUCGC-UCauCU-CGCUUGUGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 4972 0.67 0.966358
Target:  5'- uGAGCGAgaggugguuguuGUGGAGCGGcgcuuccuGCGCGGGggCc -3'
miRNA:   3'- -CUCGCU------------CAUCUCGCU--------UGUGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 8002 0.75 0.645581
Target:  5'- cGGGCGGGcgGGAGgGGGCGCGAGAc-- -3'
miRNA:   3'- -CUCGCUCa-UCUCgCUUGUGCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 10980 0.66 0.986077
Target:  5'- uGGGUGucacGGUGGAGCGGGC-CGGGggCc -3'
miRNA:   3'- -CUCGC----UCAUCUCGCUUGuGCUCuaGa -5'
29402 5' -51.5 NC_006151.1 + 11759 0.69 0.921188
Target:  5'- cGGGCGAGU-GAGCGuGCGCGAaGGg-- -3'
miRNA:   3'- -CUCGCUCAuCUCGCuUGUGCU-CUaga -5'
29402 5' -51.5 NC_006151.1 + 12354 0.68 0.955413
Target:  5'- gGGGCGGGgAGcGCGAGCGgGAGAa-- -3'
miRNA:   3'- -CUCGCUCaUCuCGCUUGUgCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 12393 0.68 0.955413
Target:  5'- aGAGCGAG-AGcGgGAACugGAGAg-- -3'
miRNA:   3'- -CUCGCUCaUCuCgCUUGugCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 14474 0.7 0.909102
Target:  5'- uGGGCGGGUGG-GCGggUggGCGGGgGUCg -3'
miRNA:   3'- -CUCGCUCAUCuCGCuuG--UGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 19241 0.67 0.9778
Target:  5'- -uGCGAGUGGaAGcCGAGCGCGuGGa-- -3'
miRNA:   3'- cuCGCUCAUC-UC-GCUUGUGCuCUaga -5'
29402 5' -51.5 NC_006151.1 + 21566 0.67 0.972507
Target:  5'- cGGCGAGcccgccgAGGGCc-GCGCGGGGUCg -3'
miRNA:   3'- cUCGCUCa------UCUCGcuUGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 27371 0.67 0.977058
Target:  5'- cGGGCGGGUcgacGGGCGAgaacggcggggaggGCACGGGcUCg -3'
miRNA:   3'- -CUCGCUCAu---CUCGCU--------------UGUGCUCuAGa -5'
29402 5' -51.5 NC_006151.1 + 28660 0.66 0.987717
Target:  5'- gGGGCacGUGGGGCaAACGgCGGGAUCUg -3'
miRNA:   3'- -CUCGcuCAUCUCGcUUGU-GCUCUAGA- -5'
29402 5' -51.5 NC_006151.1 + 29445 0.66 0.987717
Target:  5'- cGGCGGGgAGAGgGGACGCgGAGGg-- -3'
miRNA:   3'- cUCGCUCaUCUCgCUUGUG-CUCUaga -5'
29402 5' -51.5 NC_006151.1 + 30168 0.68 0.962946
Target:  5'- -cGCGGG-AGGGCGggUGagaGAGGUCg -3'
miRNA:   3'- cuCGCUCaUCUCGCuuGUg--CUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 31247 0.67 0.975256
Target:  5'- cGAGCGAGcgggcGGGCGAGC-CGGGGc-- -3'
miRNA:   3'- -CUCGCUCau---CUCGCUUGuGCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 32131 0.72 0.842581
Target:  5'- gGGGgGAGagAGAGCGAgggGCGCGAGcgCUu -3'
miRNA:   3'- -CUCgCUCa-UCUCGCU---UGUGCUCuaGA- -5'
29402 5' -51.5 NC_006151.1 + 34628 0.78 0.529904
Target:  5'- -cGCGGGUGGGGCGAcCGCGGGgGUCg -3'
miRNA:   3'- cuCGCUCAUCUCGCUuGUGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 42342 0.67 0.966358
Target:  5'- -cGgGAGUGGAGCGGAgGgGAGGg-- -3'
miRNA:   3'- cuCgCUCAUCUCGCUUgUgCUCUaga -5'
29402 5' -51.5 NC_006151.1 + 42793 0.66 0.986077
Target:  5'- uGGGCGGGgu-GGCGGgacGCGuCGAGGUCg -3'
miRNA:   3'- -CUCGCUCaucUCGCU---UGU-GCUCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.