miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 5' -51.5 NC_006151.1 + 133740 0.84 0.252379
Target:  5'- cGAGCGAGUGGGGuCGGGCGCGugcGGAUCg -3'
miRNA:   3'- -CUCGCUCAUCUC-GCUUGUGC---UCUAGa -5'
29402 5' -51.5 NC_006151.1 + 133406 0.69 0.932245
Target:  5'- cGAGCGGGcGGucuuggccGCGGACGCGGGgGUCUu -3'
miRNA:   3'- -CUCGCUCaUCu-------CGCUUGUGCUC-UAGA- -5'
29402 5' -51.5 NC_006151.1 + 130933 0.67 0.9778
Target:  5'- -cGCGGGggcgGGGGCG-GCGgGGGGUCg -3'
miRNA:   3'- cuCGCUCa---UCUCGCuUGUgCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 116803 0.98 0.033693
Target:  5'- cGAGCGAGUAGAGCaGACACGAGAUCUg -3'
miRNA:   3'- -CUCGCUCAUCUCGcUUGUGCUCUAGA- -5'
29402 5' -51.5 NC_006151.1 + 113240 0.69 0.937387
Target:  5'- uGGaCGAGUAcuGGGCgGAGCACGAGggCUu -3'
miRNA:   3'- cUC-GCUCAU--CUCG-CUUGUGCUCuaGA- -5'
29402 5' -51.5 NC_006151.1 + 96104 0.66 0.987717
Target:  5'- uGAGCGGGguu-GCGGGCACGA--UCg -3'
miRNA:   3'- -CUCGCUCaucuCGCUUGUGCUcuAGa -5'
29402 5' -51.5 NC_006151.1 + 93430 0.67 0.966358
Target:  5'- aGAG-GAGgaggGGGGCGAGCG-GGGGUCg -3'
miRNA:   3'- -CUCgCUCa---UCUCGCUUGUgCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 91076 0.7 0.915273
Target:  5'- aAGuCGAGgccgcGGGCGAGCGCGaAGGUCg -3'
miRNA:   3'- cUC-GCUCau---CUCGCUUGUGC-UCUAGa -5'
29402 5' -51.5 NC_006151.1 + 90454 0.66 0.9823
Target:  5'- cAGCGGGUGGAcuCGAGCGCGcAGcgCc -3'
miRNA:   3'- cUCGCUCAUCUc-GCUUGUGC-UCuaGa -5'
29402 5' -51.5 NC_006151.1 + 89167 0.66 0.986077
Target:  5'- cGGGCGA----GGCGGGCGCGGGgGUCg -3'
miRNA:   3'- -CUCGCUcaucUCGCUUGUGCUC-UAGa -5'
29402 5' -51.5 NC_006151.1 + 84397 0.66 0.980145
Target:  5'- cGGGCGGGgagcGGGUGGGCGCGGuGAUa- -3'
miRNA:   3'- -CUCGCUCau--CUCGCUUGUGCU-CUAga -5'
29402 5' -51.5 NC_006151.1 + 74135 0.66 0.989203
Target:  5'- -cGCGGGUGcAGCGggUGCcgGGGGUCg -3'
miRNA:   3'- cuCGCUCAUcUCGCuuGUG--CUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 73039 0.66 0.989061
Target:  5'- uGGCG-GUGGcGCGGuggggguGCGCGGGGUCc -3'
miRNA:   3'- cUCGCuCAUCuCGCU-------UGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 72774 0.68 0.955413
Target:  5'- cGGCGGGUacgccuccuggaAGAGCGcGCACG-GGUCc -3'
miRNA:   3'- cUCGCUCA------------UCUCGCuUGUGCuCUAGa -5'
29402 5' -51.5 NC_006151.1 + 72604 0.66 0.980145
Target:  5'- gGGGgGGGcAGGGCGGAgACGAcGGUCc -3'
miRNA:   3'- -CUCgCUCaUCUCGCUUgUGCU-CUAGa -5'
29402 5' -51.5 NC_006151.1 + 68918 0.66 0.986077
Target:  5'- -cGCGGGcGGAucGCGAACuCGAuGAUCUg -3'
miRNA:   3'- cuCGCUCaUCU--CGCUUGuGCU-CUAGA- -5'
29402 5' -51.5 NC_006151.1 + 65683 0.67 0.972507
Target:  5'- cGGCGAGguccccGucCGGGCGCGGGAUCa -3'
miRNA:   3'- cUCGCUCau----CucGCUUGUGCUCUAGa -5'
29402 5' -51.5 NC_006151.1 + 60936 0.7 0.889072
Target:  5'- uGGGCGAGUAGAGCugccccagcguGGACAUGAccUCg -3'
miRNA:   3'- -CUCGCUCAUCUCG-----------CUUGUGCUcuAGa -5'
29402 5' -51.5 NC_006151.1 + 60898 0.66 0.980145
Target:  5'- -cGCGAGcAGGGCGuccACGCGGGccaGUCg -3'
miRNA:   3'- cuCGCUCaUCUCGCu--UGUGCUC---UAGa -5'
29402 5' -51.5 NC_006151.1 + 49631 0.66 0.989203
Target:  5'- -cGCGAGUgGGGGUGGGCcguggAgGAGGUCg -3'
miRNA:   3'- cuCGCUCA-UCUCGCUUG-----UgCUCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.