miRNA display CGI


Results 41 - 60 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 139239 0.66 0.680344
Target:  5'- cGC-GCGCGucuCCgGCGCGAcggccacGCCCGCGc -3'
miRNA:   3'- -CGuCGUGCuucGG-CGCGCU-------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 66052 0.66 0.67838
Target:  5'- cGguGCcuguccaggaccccGCGGacGGCCGCcugggcuuccacGCGGGCCUGCa -3'
miRNA:   3'- -CguCG--------------UGCU--UCGGCG------------CGCUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 29412 0.66 0.67838
Target:  5'- --cGCGCGGagaaggcucgguguGGCCGCGgGGGgCgGCGg -3'
miRNA:   3'- cguCGUGCU--------------UCGGCGCgCUCgGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 24893 0.66 0.671496
Target:  5'- gGCGGgcCACGAAGaCGCGgcccucCGAGCCCGa- -3'
miRNA:   3'- -CGUC--GUGCUUCgGCGC------GCUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 39966 0.66 0.671496
Target:  5'- -gGGCGcCGucGCCGcCGCGGGCgccCCGCc -3'
miRNA:   3'- cgUCGU-GCuuCGGC-GCGCUCG---GGCGc -5'
29403 3' -61.2 NC_006151.1 + 52999 0.66 0.671496
Target:  5'- cGCGGUGCGAcgAGUacagGCGCGuccAGCCCuGCa -3'
miRNA:   3'- -CGUCGUGCU--UCGg---CGCGC---UCGGG-CGc -5'
29403 3' -61.2 NC_006151.1 + 54668 0.66 0.671496
Target:  5'- -gAGCACGAccuGGCCgggcaccuGCGCGucGCCgGCa -3'
miRNA:   3'- cgUCGUGCU---UCGG--------CGCGCu-CGGgCGc -5'
29403 3' -61.2 NC_006151.1 + 73588 0.66 0.671496
Target:  5'- uCAGgGCGAAGCCgGgGUGcAGCUgGCGc -3'
miRNA:   3'- cGUCgUGCUUCGG-CgCGC-UCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 121994 0.66 0.671496
Target:  5'- gGCGGCGCGu-GCCGCuuccacGCGcGCgUCGCGc -3'
miRNA:   3'- -CGUCGUGCuuCGGCG------CGCuCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 46567 0.66 0.671496
Target:  5'- -aGGCGCucc-CCGCGCaGGGCCCGaCGg -3'
miRNA:   3'- cgUCGUGcuucGGCGCG-CUCGGGC-GC- -5'
29403 3' -61.2 NC_006151.1 + 71667 0.66 0.671496
Target:  5'- uGCAcacGCGCGccacGGGCCGCGUgccGAGCgugucgcccagCCGCGa -3'
miRNA:   3'- -CGU---CGUGC----UUCGGCGCG---CUCG-----------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 77295 0.66 0.671496
Target:  5'- --uGC-CGc-GCCGCGUGuGCCCGCc -3'
miRNA:   3'- cguCGuGCuuCGGCGCGCuCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 91233 0.66 0.671496
Target:  5'- cGCAGgcgacgcuCGgGGAGCCGggccccguCGCGAggacGCCCGCGu -3'
miRNA:   3'- -CGUC--------GUgCUUCGGC--------GCGCU----CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 97853 0.66 0.671496
Target:  5'- cGCAGCGCGucGuCCGCGUucucGGCggCCGCc -3'
miRNA:   3'- -CGUCGUGCuuC-GGCGCGc---UCG--GGCGc -5'
29403 3' -61.2 NC_006151.1 + 101865 0.66 0.671496
Target:  5'- gGCGGCGCaccgcucccGccGCCGcCGCGGGUCCagaaGCGg -3'
miRNA:   3'- -CGUCGUG---------CuuCGGC-GCGCUCGGG----CGC- -5'
29403 3' -61.2 NC_006151.1 + 102042 0.66 0.670511
Target:  5'- -gAGCugGAgcuGGCCcCGCucgaccuGGGCCCGCu -3'
miRNA:   3'- cgUCGugCU---UCGGcGCG-------CUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 97548 0.66 0.670511
Target:  5'- -aAGCG-GAGGCCGUcgucgccgccgagGCGcAGCUCGCGg -3'
miRNA:   3'- cgUCGUgCUUCGGCG-------------CGC-UCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 116205 0.66 0.668541
Target:  5'- gGCGcGCGCGAgcgugauguuggcgAGCCGCGCcacggccgaGAGCUCGa- -3'
miRNA:   3'- -CGU-CGUGCU--------------UCGGCGCG---------CUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 135116 0.66 0.665584
Target:  5'- gGUAGCGCGcggggcGGGCUGgGCGgggacgggcagacccAGCCCgGCGg -3'
miRNA:   3'- -CGUCGUGC------UUCGGCgCGC---------------UCGGG-CGC- -5'
29403 3' -61.2 NC_006151.1 + 92752 0.66 0.662624
Target:  5'- cGCGGCACGGGcaccugagcgugcuGCgGCGCGuccccaucgugcaggAGCCCuCGg -3'
miRNA:   3'- -CGUCGUGCUU--------------CGgCGCGC---------------UCGGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.