miRNA display CGI


Results 21 - 40 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 133316 0.66 0.691117
Target:  5'- gGCGGCccguguCGAGGCgCGC-CGGGCggccgguuCCGCGg -3'
miRNA:   3'- -CGUCGu-----GCUUCG-GCGcGCUCG--------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 134710 0.66 0.691117
Target:  5'- uGCAGCACcgccCCGCGUG-GCCuucgCGCGg -3'
miRNA:   3'- -CGUCGUGcuucGGCGCGCuCGG----GCGC- -5'
29403 3' -61.2 NC_006151.1 + 4349 0.66 0.691117
Target:  5'- gGCGGCGCGGAcGCgGgCGCagaGGGCCuCGaCGg -3'
miRNA:   3'- -CGUCGUGCUU-CGgC-GCG---CUCGG-GC-GC- -5'
29403 3' -61.2 NC_006151.1 + 12673 0.66 0.691117
Target:  5'- cGCGGC-CGcAGCCGcCGCGA-UCCGUc -3'
miRNA:   3'- -CGUCGuGCuUCGGC-GCGCUcGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 26942 0.66 0.691117
Target:  5'- cGCGGUcguaGAcGUCGCGCucguuGAGCUCGCGc -3'
miRNA:   3'- -CGUCGug--CUuCGGCGCG-----CUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 73321 0.66 0.691117
Target:  5'- cCAGCAUGGGcggggcGCCGCGCGuGGCgaagagguuCUGCGg -3'
miRNA:   3'- cGUCGUGCUU------CGGCGCGC-UCG---------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 87476 0.66 0.691117
Target:  5'- cCAGCAgCGGcAGCCGcCGCGGccGCCCcCGu -3'
miRNA:   3'- cGUCGU-GCU-UCGGC-GCGCU--CGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 106191 0.66 0.691117
Target:  5'- cGCcGCugGAgccGGCgGUGCG-GCUCGCc -3'
miRNA:   3'- -CGuCGugCU---UCGgCGCGCuCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 45289 0.66 0.690139
Target:  5'- aGCGGCGgucguccCGAGGaCC-CGCGAGgCCGgGa -3'
miRNA:   3'- -CGUCGU-------GCUUC-GGcGCGCUCgGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 97244 0.66 0.690139
Target:  5'- gGUGGCGCG--GCCGCGCaugucggGGGCCCa-- -3'
miRNA:   3'- -CGUCGUGCuuCGGCGCG-------CUCGGGcgc -5'
29403 3' -61.2 NC_006151.1 + 135779 0.66 0.682306
Target:  5'- -gGGCugGAcgaggccuucucacuGCCGgGCGAGCgCGCc -3'
miRNA:   3'- cgUCGugCUu--------------CGGCgCGCUCGgGCGc -5'
29403 3' -61.2 NC_006151.1 + 63119 0.66 0.681325
Target:  5'- uGCAGUcaguacgcccGCGAGGCUuCGCGGagguuCCCGCGc -3'
miRNA:   3'- -CGUCG----------UGCUUCGGcGCGCUc----GGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 64989 0.66 0.681325
Target:  5'- aGCAGCACGuGGCCcaGCGCGcacaGGUcgaUCGCc -3'
miRNA:   3'- -CGUCGUGCuUCGG--CGCGC----UCG---GGCGc -5'
29403 3' -61.2 NC_006151.1 + 65712 0.66 0.681325
Target:  5'- -aGGUAgGggGCCucGCGCGGcuGCgCGCGg -3'
miRNA:   3'- cgUCGUgCuuCGG--CGCGCU--CGgGCGC- -5'
29403 3' -61.2 NC_006151.1 + 82490 0.66 0.681325
Target:  5'- -uGGUACGAgacgagguaccGGCCGaGCaGGuGCCCGCGg -3'
miRNA:   3'- cgUCGUGCU-----------UCGGCgCG-CU-CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 36133 0.66 0.681325
Target:  5'- cGCGGC-CGGAGCCa--CGAGgCCGCc -3'
miRNA:   3'- -CGUCGuGCUUCGGcgcGCUCgGGCGc -5'
29403 3' -61.2 NC_006151.1 + 82241 0.66 0.681325
Target:  5'- cGCAGCGCGAcgcgcaGGCCGagGaaGGCCuCGCc -3'
miRNA:   3'- -CGUCGUGCU------UCGGCg-CgcUCGG-GCGc -5'
29403 3' -61.2 NC_006151.1 + 92225 0.66 0.681325
Target:  5'- -gAGCACGAuGCUGCaCGcGCCgCGCa -3'
miRNA:   3'- cgUCGUGCUuCGGCGcGCuCGG-GCGc -5'
29403 3' -61.2 NC_006151.1 + 118433 0.66 0.681325
Target:  5'- -gGGCGCGGAGgUGUGCGcGCggcucggccuggCCGCGg -3'
miRNA:   3'- cgUCGUGCUUCgGCGCGCuCG------------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 121189 0.66 0.681325
Target:  5'- uGCuGCACGcgcucGGGgCGCGCacgcagcaccugGAGCCCGaCGa -3'
miRNA:   3'- -CGuCGUGC-----UUCgGCGCG------------CUCGGGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.