miRNA display CGI


Results 21 - 40 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 4349 0.66 0.691117
Target:  5'- gGCGGCGCGGAcGCgGgCGCagaGGGCCuCGaCGg -3'
miRNA:   3'- -CGUCGUGCUU-CGgC-GCG---CUCGG-GC-GC- -5'
29403 3' -61.2 NC_006151.1 + 4392 0.71 0.367361
Target:  5'- cCGGCGCGggGguCCGCgGCGcGGCCCGgGu -3'
miRNA:   3'- cGUCGUGCuuC--GGCG-CGC-UCGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 4781 0.69 0.468719
Target:  5'- -gGGCACGGgcccGGCCGCggcgcgguaGCGGGC-CGCGg -3'
miRNA:   3'- cgUCGUGCU----UCGGCG---------CGCUCGgGCGC- -5'
29403 3' -61.2 NC_006151.1 + 4938 0.69 0.514996
Target:  5'- aGCGGCcCGucGGUCgGCGgGGGCCCGuCGg -3'
miRNA:   3'- -CGUCGuGCu-UCGG-CGCgCUCGGGC-GC- -5'
29403 3' -61.2 NC_006151.1 + 4995 0.76 0.203371
Target:  5'- aGCGGCGCuuccugcgcgGggGCCGgGCGGGCuCCGgGg -3'
miRNA:   3'- -CGUCGUG----------CuuCGGCgCGCUCG-GGCgC- -5'
29403 3' -61.2 NC_006151.1 + 5031 0.69 0.514996
Target:  5'- -nGGC-CGggGCCGgG-GAGgCCGCGg -3'
miRNA:   3'- cgUCGuGCuuCGGCgCgCUCgGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 5080 0.75 0.234501
Target:  5'- -gGGcCGCGggGCCGCgGCGGGCgCCgGCGg -3'
miRNA:   3'- cgUC-GUGCuuCGGCG-CGCUCG-GG-CGC- -5'
29403 3' -61.2 NC_006151.1 + 5240 0.74 0.25741
Target:  5'- cGCcGCGCGGcGGCgGCGgGGGCCCGgGg -3'
miRNA:   3'- -CGuCGUGCU-UCGgCGCgCUCGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 5360 0.67 0.592415
Target:  5'- cCGGCGCGgcGCCG-GCGGGgCUGUc -3'
miRNA:   3'- cGUCGUGCuuCGGCgCGCUCgGGCGc -5'
29403 3' -61.2 NC_006151.1 + 5528 0.68 0.534028
Target:  5'- aGCGGC-CGAggaucgAGCCGCcucgcggcgGCGGGCUCGuCGa -3'
miRNA:   3'- -CGUCGuGCU------UCGGCG---------CGCUCGGGC-GC- -5'
29403 3' -61.2 NC_006151.1 + 5659 0.66 0.700862
Target:  5'- gGCGGCGgggGAGGCUGgggaaGCGGGCCCcCGc -3'
miRNA:   3'- -CGUCGUg--CUUCGGCg----CGCUCGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 5737 0.72 0.351993
Target:  5'- cGgGGUcCGAGGCCGCGCcgccGGCCCGgGc -3'
miRNA:   3'- -CgUCGuGCUUCGGCGCGc---UCGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 5867 0.68 0.524479
Target:  5'- -gAGCGCccGggGCCGcCGgGGGCCC-CGg -3'
miRNA:   3'- cgUCGUG--CuuCGGC-GCgCUCGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 5924 0.68 0.524479
Target:  5'- gGCGGC-CGggGCC-CG-GAGCCgGCc -3'
miRNA:   3'- -CGUCGuGCuuCGGcGCgCUCGGgCGc -5'
29403 3' -61.2 NC_006151.1 + 8296 0.68 0.543637
Target:  5'- --cGCGCGGGcGCCGCGUcccgccccGAGCCCcCGg -3'
miRNA:   3'- cguCGUGCUU-CGGCGCG--------CUCGGGcGC- -5'
29403 3' -61.2 NC_006151.1 + 8365 0.66 0.691117
Target:  5'- -aGGCGCGAGGCCcccgcccccGgGgGGGUCCGgGa -3'
miRNA:   3'- cgUCGUGCUUCGG---------CgCgCUCGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 9640 0.66 0.700862
Target:  5'- aGCGGgAgGGAGagGCGCGGcGCcCCGCGc -3'
miRNA:   3'- -CGUCgUgCUUCggCGCGCU-CG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 10468 0.69 0.496246
Target:  5'- cGCGGCgGCGGugaaggaggagAGCCgcccgGCGCGcGCCCGCc -3'
miRNA:   3'- -CGUCG-UGCU-----------UCGG-----CGCGCuCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 10674 0.66 0.691117
Target:  5'- -gAGCGCGGAGCgCGcCGCcccCCCGUGa -3'
miRNA:   3'- cgUCGUGCUUCG-GC-GCGcucGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 10931 0.68 0.563019
Target:  5'- aCGGCGcCGAggguGGgCGCGCGuGUCCGUGu -3'
miRNA:   3'- cGUCGU-GCU----UCgGCGCGCuCGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.