miRNA display CGI


Results 1 - 20 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 655 0.71 0.399453
Target:  5'- cCGGgGCGcGGCCgGgGCGGGCuCCGCGg -3'
miRNA:   3'- cGUCgUGCuUCGG-CgCGCUCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2101 0.66 0.661637
Target:  5'- -gGGCcCGAgcgGGCCGCG-GGGCCgGCc -3'
miRNA:   3'- cgUCGuGCU---UCGGCGCgCUCGGgCGc -5'
29403 3' -61.2 NC_006151.1 + 2186 0.7 0.416157
Target:  5'- cCGGCGCccGAGGCCccCGCGGGCCgGUGg -3'
miRNA:   3'- cGUCGUG--CUUCGGc-GCGCUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 2275 0.7 0.450809
Target:  5'- -gAGCACG--GCCgGCGgGGcGCCCGCGg -3'
miRNA:   3'- cgUCGUGCuuCGG-CGCgCU-CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2390 0.71 0.375216
Target:  5'- gGCAgGCccuCGggGCCGCG-GAGCUCgGCGa -3'
miRNA:   3'- -CGU-CGu--GCuuCGGCGCgCUCGGG-CGC- -5'
29403 3' -61.2 NC_006151.1 + 2453 0.74 0.24919
Target:  5'- cGCAGCGgggcgcCGAgcccccagcgguuGGCCGCGCGGugcccgaaggcggcGCCCGCGu -3'
miRNA:   3'- -CGUCGU------GCU-------------UCGGCGCGCU--------------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2612 0.68 0.534028
Target:  5'- gGCAGCGggaccggggucCGggGCCcgGCGCGGGUgcucaCCGUGu -3'
miRNA:   3'- -CGUCGU-----------GCuuCGG--CGCGCUCG-----GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2769 0.81 0.084799
Target:  5'- cCAGCACG--GCCGCGCgGAGCUCGCGg -3'
miRNA:   3'- cGUCGUGCuuCGGCGCG-CUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2904 0.73 0.2912
Target:  5'- cCAGCACGAugagccggcgccgcGCCGCGcCGAGC-CGCGa -3'
miRNA:   3'- cGUCGUGCUu-------------CGGCGC-GCUCGgGCGC- -5'
29403 3' -61.2 NC_006151.1 + 3097 0.71 0.367361
Target:  5'- aGCAGCGCcgaGAGGCCgccgcgGCGCGGGUCCcaggccgggcGCGg -3'
miRNA:   3'- -CGUCGUG---CUUCGG------CGCGCUCGGG----------CGC- -5'
29403 3' -61.2 NC_006151.1 + 3248 0.71 0.383184
Target:  5'- cGCGGCgGCGGAGCgGgGCGccgcGGCgCGCGg -3'
miRNA:   3'- -CGUCG-UGCUUCGgCgCGC----UCGgGCGC- -5'
29403 3' -61.2 NC_006151.1 + 3437 0.7 0.450809
Target:  5'- cGCGGCG-GAAGCCGcCGuCGGGCgCGgGg -3'
miRNA:   3'- -CGUCGUgCUUCGGC-GC-GCUCGgGCgC- -5'
29403 3' -61.2 NC_006151.1 + 3532 0.72 0.344481
Target:  5'- aGCAGCGCGGgagcggGGuCCGgaGCGGGCCCGa- -3'
miRNA:   3'- -CGUCGUGCU------UC-GGCg-CGCUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 3930 0.72 0.351993
Target:  5'- -gAGCGgGGgcaGGCCggGCGCGGGCuCCGCGg -3'
miRNA:   3'- cgUCGUgCU---UCGG--CGCGCUCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 3960 0.67 0.612158
Target:  5'- -gGGCcCG-GGCCGCGCGgcGGCCUcgGCGa -3'
miRNA:   3'- cgUCGuGCuUCGGCGCGC--UCGGG--CGC- -5'
29403 3' -61.2 NC_006151.1 + 3995 0.66 0.650767
Target:  5'- cGCGGCcacguuggccgggGCGAagagGGCCGCgGCGuagguccaggcGGCCuCGCGg -3'
miRNA:   3'- -CGUCG-------------UGCU----UCGGCG-CGC-----------UCGG-GCGC- -5'
29403 3' -61.2 NC_006151.1 + 4083 0.66 0.695021
Target:  5'- aGCGGCgccacggugcgggcgACGAGGgCGacaGAGUCCGCGg -3'
miRNA:   3'- -CGUCG---------------UGCUUCgGCgcgCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 4176 0.67 0.606227
Target:  5'- aGCAGCGCGGccgucaccuccucgaGGCaG-GCGGGCCCGa- -3'
miRNA:   3'- -CGUCGUGCU---------------UCGgCgCGCUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 4217 0.7 0.433282
Target:  5'- gGCGGC-CGggGCgCGgGCGGGCgCGgGc -3'
miRNA:   3'- -CGUCGuGCuuCG-GCgCGCUCGgGCgC- -5'
29403 3' -61.2 NC_006151.1 + 4309 0.68 0.553303
Target:  5'- cCAGCucGCGggGCaCGCGgcCGGGCUgCGCGg -3'
miRNA:   3'- cGUCG--UGCuuCG-GCGC--GCUCGG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.