miRNA display CGI


Results 1 - 20 of 599 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 142295 0.68 0.543637
Target:  5'- cCGGCcgggacgagaGCGAGcGCCGUauGgGGGCCCGCGc -3'
miRNA:   3'- cGUCG----------UGCUU-CGGCG--CgCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 141818 0.68 0.553303
Target:  5'- -gGGCACG-GGCCGguuCGgGGGuCCCGCGc -3'
miRNA:   3'- cgUCGUGCuUCGGC---GCgCUC-GGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 141699 0.72 0.351993
Target:  5'- gGCGGCugGcGGCgGaCGCGGuGCCCGgGg -3'
miRNA:   3'- -CGUCGugCuUCGgC-GCGCU-CGGGCgC- -5'
29403 3' -61.2 NC_006151.1 + 141646 0.77 0.16749
Target:  5'- gGCGGCGCGGcggGGCCcCGCGGGCUCGUu -3'
miRNA:   3'- -CGUCGUGCU---UCGGcGCGCUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 141462 0.66 0.700862
Target:  5'- gGCGGUcUGGAGCCggggGCGcCGAGUCCGa- -3'
miRNA:   3'- -CGUCGuGCUUCGG----CGC-GCUCGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 140380 0.68 0.553303
Target:  5'- cGCGGCuCG-AGCUGCGUGcuGCCCGa- -3'
miRNA:   3'- -CGUCGuGCuUCGGCGCGCu-CGGGCgc -5'
29403 3' -61.2 NC_006151.1 + 140054 0.71 0.407752
Target:  5'- cGCAcGCcacCGAGGCggCGCGCGuGCuCCGCGa -3'
miRNA:   3'- -CGU-CGu--GCUUCG--GCGCGCuCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 139829 0.72 0.351993
Target:  5'- cGCAcGCGCGGGuCgGCGCGA-CCCGCGu -3'
miRNA:   3'- -CGU-CGUGCUUcGgCGCGCUcGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 139623 0.72 0.322645
Target:  5'- cGCGGCugGggGCCauccggcgccgGCGCGgGGgUCGCGg -3'
miRNA:   3'- -CGUCGugCuuCGG-----------CGCGC-UCgGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 139563 0.68 0.543637
Target:  5'- aGCGGCGCccGGuCCGCGagcgccuGGGCUCGCGc -3'
miRNA:   3'- -CGUCGUGcuUC-GGCGCg------CUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 139306 0.66 0.700862
Target:  5'- uGCGGCGCGu-GCUGCuCGAccguGCUCGCc -3'
miRNA:   3'- -CGUCGUGCuuCGGCGcGCU----CGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 139239 0.66 0.680344
Target:  5'- cGC-GCGCGucuCCgGCGCGAcggccacGCCCGCGc -3'
miRNA:   3'- -CGuCGUGCuucGG-CGCGCU-------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 138714 0.66 0.651756
Target:  5'- cGCuGCGCGccG-CGCGCGGGUcguguacgcgcgCCGCGa -3'
miRNA:   3'- -CGuCGUGCuuCgGCGCGCUCG------------GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 138340 0.74 0.27577
Target:  5'- gGCAcGCGCGcAGCC-CGCcGGCCCGCa -3'
miRNA:   3'- -CGU-CGUGCuUCGGcGCGcUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 138299 0.68 0.57278
Target:  5'- cCAGCucuGCGGGuCCGCGCGcuucagcuGCCUGCGg -3'
miRNA:   3'- cGUCG---UGCUUcGGCGCGCu-------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 138063 0.68 0.524479
Target:  5'- -gAGCGCaAGGCgGCGCGGaaCCGCGa -3'
miRNA:   3'- cgUCGUGcUUCGgCGCGCUcgGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 137298 0.69 0.468719
Target:  5'- gGCcauGCGCGGGuuccGCCGCGCGGugcucgacgcGCUCGCGc -3'
miRNA:   3'- -CGu--CGUGCUU----CGGCGCGCU----------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 137138 0.84 0.058058
Target:  5'- cGCGGCGCGAcgcggcgccggagauGGCCGCGCacGAGCCgGCGg -3'
miRNA:   3'- -CGUCGUGCU---------------UCGGCGCG--CUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 137004 0.68 0.553303
Target:  5'- cGCGcGCACGgcGCUGgGCGcccugcucGGCCUGCc -3'
miRNA:   3'- -CGU-CGUGCuuCGGCgCGC--------UCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 136975 0.66 0.661637
Target:  5'- -gAGCugGccGCCGCGCcGGgCgGCGg -3'
miRNA:   3'- cgUCGugCuuCGGCGCGcUCgGgCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.