miRNA display CGI


Results 1 - 20 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 116131 1.1 0.000796
Target:  5'- gGCAGCACGAAGCCGCGCGAGCCCGCGa -3'
miRNA:   3'- -CGUCGUGCUUCGGCGCGCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 86314 0.89 0.024043
Target:  5'- cGCAGCugGggGCCGUGCucGCCCGCGc -3'
miRNA:   3'- -CGUCGugCuuCGGCGCGcuCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 120322 0.84 0.057454
Target:  5'- gGCAGCcucuCGGAcGCCGCGCGcGCCCGCGu -3'
miRNA:   3'- -CGUCGu---GCUU-CGGCGCGCuCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 137138 0.84 0.058058
Target:  5'- cGCGGCGCGAcgcggcgccggagauGGCCGCGCacGAGCCgGCGg -3'
miRNA:   3'- -CGUCGUGCU---------------UCGGCGCG--CUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 102404 0.84 0.058975
Target:  5'- cGCGGCGCGc-GUCGCGCG-GCCCGCGa -3'
miRNA:   3'- -CGUCGUGCuuCGGCGCGCuCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 65170 0.83 0.065456
Target:  5'- uGCGGCgcGCGAGGCggaaGCGCGGGUCCGCGa -3'
miRNA:   3'- -CGUCG--UGCUUCGg---CGCGCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 2769 0.81 0.084799
Target:  5'- cCAGCACG--GCCGCGCgGAGCUCGCGg -3'
miRNA:   3'- cGUCGUGCuuCGGCGCG-CUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 69946 0.81 0.085677
Target:  5'- gGCAGCGagacgaacagcccccCGggGCCGCGCGGGCgCUGCa -3'
miRNA:   3'- -CGUCGU---------------GCuuCGGCGCGCUCG-GGCGc -5'
29403 3' -61.2 NC_006151.1 + 96062 0.81 0.089275
Target:  5'- aGCAGCugGcgagcGAGCCGCGCGcgcGGCCgGCGa -3'
miRNA:   3'- -CGUCGugC-----UUCGGCGCGC---UCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 136815 0.8 0.098907
Target:  5'- cGCGGC-CGAcgcGCCGCGCGGGCuCUGCGa -3'
miRNA:   3'- -CGUCGuGCUu--CGGCGCGCUCG-GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 130945 0.8 0.101465
Target:  5'- gGCGGCGgGggGUCGCGCGGGCgCGgGg -3'
miRNA:   3'- -CGUCGUgCuuCGGCGCGCUCGgGCgC- -5'
29403 3' -61.2 NC_006151.1 + 105687 0.8 0.109237
Target:  5'- gGCGGCGCGggGCCgacgccgGCGCG-GCCgCGCGc -3'
miRNA:   3'- -CGUCGUGCuuCGG-------CGCGCuCGG-GCGC- -5'
29403 3' -61.2 NC_006151.1 + 96587 0.8 0.109515
Target:  5'- cGCGGCGCGAGGCgccggGCGCGGGCgCGCc -3'
miRNA:   3'- -CGUCGUGCUUCGg----CGCGCUCGgGCGc -5'
29403 3' -61.2 NC_006151.1 + 74771 0.79 0.115211
Target:  5'- uGCGcCACG-AGCCGCGCGAGCgCGCa -3'
miRNA:   3'- -CGUcGUGCuUCGGCGCGCUCGgGCGc -5'
29403 3' -61.2 NC_006151.1 + 18999 0.79 0.118161
Target:  5'- cGCGGCGCGccaccAGCCGCGCGcgcGCCgGCGa -3'
miRNA:   3'- -CGUCGUGCu----UCGGCGCGCu--CGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 122661 0.79 0.12744
Target:  5'- aGCGGCGCGAGcGCCGCGCcGAgguGCgCGCGg -3'
miRNA:   3'- -CGUCGUGCUU-CGGCGCG-CU---CGgGCGC- -5'
29403 3' -61.2 NC_006151.1 + 130307 0.78 0.132993
Target:  5'- aCGGCGCGGAGCgCGCGCGccgcgcgcucggggAGCUCGCGc -3'
miRNA:   3'- cGUCGUGCUUCG-GCGCGC--------------UCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 107034 0.78 0.133996
Target:  5'- cGCGGCGCGGccccuGGCCG-GCGAGCCgGCc -3'
miRNA:   3'- -CGUCGUGCU-----UCGGCgCGCUCGGgCGc -5'
29403 3' -61.2 NC_006151.1 + 85157 0.78 0.133996
Target:  5'- uGCGGCAgGggGCCGgcgcCGCGGGCgCCGCc -3'
miRNA:   3'- -CGUCGUgCuuCGGC----GCGCUCG-GGCGc -5'
29403 3' -61.2 NC_006151.1 + 30893 0.78 0.133996
Target:  5'- gGCGGCgaGCGGAG-CGCGCGGuagcGCCCGCGg -3'
miRNA:   3'- -CGUCG--UGCUUCgGCGCGCU----CGGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.