miRNA display CGI


Results 21 - 40 of 599 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29403 3' -61.2 NC_006151.1 + 64466 0.78 0.133996
Target:  5'- gGCGGCGCGcgccGCCGCgGCGGggacGCCCGCGg -3'
miRNA:   3'- -CGUCGUGCuu--CGGCG-CGCU----CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 73444 0.78 0.144413
Target:  5'- -uGGCGCGggGCUGCGUGAgcugcaggugcaGCCCGCc -3'
miRNA:   3'- cgUCGUGCuuCGGCGCGCU------------CGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 51209 0.78 0.144413
Target:  5'- cCAGCAgGccGCC-CGCGGGCCCGCGc -3'
miRNA:   3'- cGUCGUgCuuCGGcGCGCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 130389 0.78 0.148046
Target:  5'- cCAGCGCGAAGgCCaGCGCcucGCCCGCGa -3'
miRNA:   3'- cGUCGUGCUUC-GG-CGCGcu-CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 67850 0.78 0.150639
Target:  5'- aGCAGCccgGCGAgccggcgccgagguGGCgCGCGCGccAGCCCGCGg -3'
miRNA:   3'- -CGUCG---UGCU--------------UCG-GCGCGC--UCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 116309 0.78 0.151763
Target:  5'- aGUAGCGCccGAugacgccgcGCuCGCGCGGGCCCGCGg -3'
miRNA:   3'- -CGUCGUG--CUu--------CG-GCGCGCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 19898 0.78 0.151763
Target:  5'- aGCAGCGCcaGGAGCUGCGCG-GCgCGCa -3'
miRNA:   3'- -CGUCGUG--CUUCGGCGCGCuCGgGCGc -5'
29403 3' -61.2 NC_006151.1 + 66379 0.77 0.15518
Target:  5'- cGCaAGCGCGAGGCCagugaGCGCGAcugcgccgaggagGCCCGCu -3'
miRNA:   3'- -CG-UCGUGCUUCGG-----CGCGCU-------------CGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 127399 0.77 0.155564
Target:  5'- cGCGGC-CG-AGUCGaCGgGAGCCCGCGg -3'
miRNA:   3'- -CGUCGuGCuUCGGC-GCgCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 118354 0.77 0.159452
Target:  5'- cGCGcGCcuGCGAGGCgGCGCGcGCCCGCu -3'
miRNA:   3'- -CGU-CG--UGCUUCGgCGCGCuCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 61782 0.77 0.159452
Target:  5'- uGCGGCGCGAGGCCG-GCcGGCUgGCGu -3'
miRNA:   3'- -CGUCGUGCUUCGGCgCGcUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 88367 0.77 0.159452
Target:  5'- cGCAGCGC-AGGCUcgGCGCGAGCgcguCCGCGg -3'
miRNA:   3'- -CGUCGUGcUUCGG--CGCGCUCG----GGCGC- -5'
29403 3' -61.2 NC_006151.1 + 38308 0.77 0.159452
Target:  5'- cGCGGCcCGGGcCCGCG-GAGCCCGCGc -3'
miRNA:   3'- -CGUCGuGCUUcGGCGCgCUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 127474 0.77 0.163427
Target:  5'- gGCGGCGCGGaacgAGCCGCG-GAcCCCGCGc -3'
miRNA:   3'- -CGUCGUGCU----UCGGCGCgCUcGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 141646 0.77 0.16749
Target:  5'- gGCGGCGCGGcggGGCCcCGCGGGCUCGUu -3'
miRNA:   3'- -CGUCGUGCU---UCGGcGCGCUCGGGCGc -5'
29403 3' -61.2 NC_006151.1 + 58236 0.77 0.171644
Target:  5'- aGCAcGCGCGccGCCacGCGCcGGCCCGCGg -3'
miRNA:   3'- -CGU-CGUGCuuCGG--CGCGcUCGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 86726 0.77 0.171644
Target:  5'- cGCGGCGCGccGCCGCGa-GGCCgGCGu -3'
miRNA:   3'- -CGUCGUGCuuCGGCGCgcUCGGgCGC- -5'
29403 3' -61.2 NC_006151.1 + 74122 0.77 0.171644
Target:  5'- -gGGCACGAGGuuGCGCGGGUgCaGCGg -3'
miRNA:   3'- cgUCGUGCUUCggCGCGCUCGgG-CGC- -5'
29403 3' -61.2 NC_006151.1 + 128006 0.77 0.175461
Target:  5'- cGCGGuCGCGggGCgGCgGCGAcggcgucugcgacGCCCGCGg -3'
miRNA:   3'- -CGUC-GUGCuuCGgCG-CGCU-------------CGGGCGC- -5'
29403 3' -61.2 NC_006151.1 + 60879 0.77 0.17589
Target:  5'- gGCAGcCGCGcagcAGCCGCGCGAGCagggcguccaCGCGg -3'
miRNA:   3'- -CGUC-GUGCu---UCGGCGCGCUCGg---------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.