Results 1 - 20 of 96 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 116167 | 1.12 | 0.003081 |
Target: 5'- aGGCACGUGAACACGCGGAUCUGCUGGc -3' miRNA: 3'- -CCGUGCACUUGUGCGCCUAGACGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 99552 | 0.82 | 0.257667 |
Target: 5'- aGCACGUGGgcgcggcGCGCGCGGcgCUGCUGc -3' miRNA: 3'- cCGUGCACU-------UGUGCGCCuaGACGACc -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 28940 | 0.78 | 0.43427 |
Target: 5'- gGGCACGUGGGCcCGagggcCGGAUCUGaUUGGg -3' miRNA: 3'- -CCGUGCACUUGuGC-----GCCUAGAC-GACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 105025 | 0.76 | 0.519655 |
Target: 5'- aGCugGUGAcGCAgGCGGcgCUGCUGc -3' miRNA: 3'- cCGugCACU-UGUgCGCCuaGACGACc -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 76664 | 0.75 | 0.56987 |
Target: 5'- gGGCGCGUGu--GCGCGG-UC-GCUGGg -3' miRNA: 3'- -CCGUGCACuugUGCGCCuAGaCGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 66480 | 0.75 | 0.573946 |
Target: 5'- cGGCACGcUgcacaacugcugcgaGAGCGCGCGGAUCUucGCcGGg -3' miRNA: 3'- -CCGUGC-A---------------CUUGUGCGCCUAGA--CGaCC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 85179 | 0.75 | 0.580072 |
Target: 5'- gGGCGcCGccgccccgcUGGGCAuCGCGGAcCUGCUGGa -3' miRNA: 3'- -CCGU-GC---------ACUUGU-GCGCCUaGACGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 61488 | 0.75 | 0.594416 |
Target: 5'- aGGC-CGUGAGCugGCGcuccuggcugauagaGGUCUGCgGGu -3' miRNA: 3'- -CCGuGCACUUGugCGC---------------CUAGACGaCC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 76167 | 0.74 | 0.621187 |
Target: 5'- uGCACGUu-GCGCGCGag-CUGCUGGa -3' miRNA: 3'- cCGUGCAcuUGUGCGCcuaGACGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 122502 | 0.73 | 0.662432 |
Target: 5'- cGGCGCGccGGCGCGCGGAcgcgCUcCUGGa -3' miRNA: 3'- -CCGUGCacUUGUGCGCCUa---GAcGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 28661 | 0.73 | 0.672702 |
Target: 5'- gGGCACGUgGGGCAaacgGCgGGAUCUGaUUGGg -3' miRNA: 3'- -CCGUGCA-CUUGUg---CG-CCUAGAC-GACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 104568 | 0.73 | 0.693134 |
Target: 5'- gGGCGCGc-GGCGCGCGGAcgugCUGCaGGc -3' miRNA: 3'- -CCGUGCacUUGUGCGCCUa---GACGaCC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 135105 | 0.72 | 0.713358 |
Target: 5'- gGGCggGCGgcgGuAGCGCGCGGggCggGCUGGg -3' miRNA: 3'- -CCG--UGCa--C-UUGUGCGCCuaGa-CGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 102976 | 0.72 | 0.713358 |
Target: 5'- cGGCGCGcu-GCugGCGcagCUGCUGGa -3' miRNA: 3'- -CCGUGCacuUGugCGCcuaGACGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 129609 | 0.72 | 0.713358 |
Target: 5'- gGGCACGUGcGCACcaGCGGGUCgaGCg-- -3' miRNA: 3'- -CCGUGCACuUGUG--CGCCUAGa-CGacc -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 54066 | 0.72 | 0.723369 |
Target: 5'- cGUugGUG-GCGCGCGGAcccUCUGCggcGGc -3' miRNA: 3'- cCGugCACuUGUGCGCCU---AGACGa--CC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 97610 | 0.72 | 0.733301 |
Target: 5'- gGGCACGUGcaccugcgagcGGCGCGCGGccauGUC-GUUGGu -3' miRNA: 3'- -CCGUGCAC-----------UUGUGCGCC----UAGaCGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 121412 | 0.72 | 0.733301 |
Target: 5'- cGGCGCGggcggGGACGuCGCGGggCUcgcgccggccucGCUGGu -3' miRNA: 3'- -CCGUGCa----CUUGU-GCGCCuaGA------------CGACC- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 103224 | 0.72 | 0.733301 |
Target: 5'- cGCGCGUGcGCGCGauggaGGAcCUGCUGcGg -3' miRNA: 3'- cCGUGCACuUGUGCg----CCUaGACGAC-C- -5' |
|||||||
29403 | 5' | -53.7 | NC_006151.1 | + | 92837 | 0.72 | 0.733301 |
Target: 5'- cGGCACGUGAagaacgAgACGCGGG-CgaaggaGCUGGc -3' miRNA: 3'- -CCGUGCACU------UgUGCGCCUaGa-----CGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home